BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0020.p
         (690 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310943|ref|YP_003775035.1| site-specific recombinase trans...   184   2e-47

>gi|300310943|ref|YP_003775035.1| site-specific recombinase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 738

 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 189/646 (29%), Positives = 302/646 (46%), Gaps = 52/646 (8%)

Query: 53  LQQHPHHAAALRHYLLHLLSVRRQTG--LYTDIGILSNDGFFSELHRRLAYRVLPPALDD 110
           L QH     A+++ L   L  R  TG  L++  G+    GFF EL  RLA  +LP  L  
Sbjct: 82  LDQHREVRRAVQNALQKTL--REATGPELFSTTGLPHEPGFFGELSERLARLILPRHLSP 139

Query: 111 RYLSDCLEKLFPFNTDYLWMHAVSVDDWVALFEVLQNADDELPSKIDTSDKFDEQKTLTE 170
             LS     +FP   D +W+  +  D    L++++  ADD +      S  + +Q     
Sbjct: 140 TDLSSLFTAMFPDPDDAVWLLELDNDLLQRLWKLM--ADDGI------SHMYWQQ----- 186

Query: 171 ILLAIQVLSYRISAIGIEPEL-IRIYSDVKAFESPFLMQNVELHRYLDGYMHHLNGDPTP 229
           I  AI  L+  + A GI P    R+   +    +PFL     L R ++ ++    GD   
Sbjct: 187 IEEAITYLTTTVVADGISPAFRQRLEPKMPMRATPFL----ALRREMEAWLRAQPGDMGA 242

Query: 230 LEDASHVLVMLDQCQEVVTRIRKSTLRLGTSIAVTYRLVRLDQHLDRLRKLLSLVDVGKP 289
           L     V +++  C     RI       G S+++ YR+ R+  HL R+ +L+  V  G P
Sbjct: 243 LRS---VRMLVAVCHAQTDRIYAHLDEYGVSVSLVYRVERMRAHLQRIGRLID-VRSGMP 298

Query: 290 ENAAALATQKRAIGLELG------LELIEAHNRKYTVRDLFAANINLLARNITENASRTG 343
             A + A    A+    G       +LI AH+ + +VR L   +  LLAR + E  +   
Sbjct: 299 GPAISPAVPGMAVKPGAGRVQLLLCDLISAHHHRDSVRGLMRRSFALLARKMVERNADHR 358

Query: 344 EHYIAEDRREYAAMYKSAAGAGFIIGFMSMIKILFSYLRAAPLVEAFLFSMNYSLGFMLI 403
           E  IA D   Y  + ++    G +I   +++K   S L     V+  L S+NY+  F+LI
Sbjct: 359 EQAIARDAAGYRRVMRAGLLGGAVIAATALLKQSLSTLGVVHFVDGALASLNYAASFLLI 418

Query: 404 HVLHFTVATKQPAMTASRIAAGLHSSDGRNLDLDSLTELIV---KVIRTQFVAVLGNLTI 460
             L   +AT+QPA+TA  +A+ +      +LD + + +LI    +++R+Q   + GNL  
Sbjct: 419 AALGGVLATRQPAVTAPALASRMG-----DLDAEGMRDLIAESGRLLRSQSAGIFGNLLA 473

Query: 461 AFP-AAYLLASGYFLLAGHHFVAPDKAQHLLHDIDPFSSLALFHAAIAGVCLFLAGLISG 519
             P  A L A G+F L     ++ + A+  +  +       L+ AA+ GV L+LA L++G
Sbjct: 474 VVPVTAALCALGWFAL-DRRPMSLEAARQSVASLSLVGPTPLY-AALTGVLLWLASLVAG 531

Query: 520 YYDNKALYTRMSQRVVRAHWLSRLLGKARTARLGDYLEISLGGLMGNFYFGILLGTIGTV 579
           + DN     R+ + V     L   LG  R  R   +LE ++  + G+F   +LLG    V
Sbjct: 532 FADNWFALRRVREVVSNHRRLVHGLGALRAQRCAAWLERNVATIAGSFALALLLGMAPVV 591

Query: 580 GFLLGLPIDIRHI-----TFAATNFAIALVGLDHAVSWGVIALSTFGVLAIGTVNLWVSF 634
                LP+DIRH+     T  A  F++    L     W    L+  GV   G +++ V+F
Sbjct: 592 AAFFSLPLDIRHVTLAAGTLTAAAFSLGWQALTTPAFW----LAAGGVAITGLLSVAVAF 647

Query: 635 SLALFVALRSRQVKFRHGWPLLKSLCARFLRKPADFFIPPRATAAT 680
           + AL +ALRSR +  R     ++++  RF+ +P  F +P RA AA 
Sbjct: 648 ACALALALRSRDLPRRARNVAMRAVLRRFVVRPLFFILPERAHAAV 693


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,952,275
Number of extensions: 78947
Number of successful extensions: 404
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 598
Effective length of database: 1,184,250
Effective search space: 708181500
Effective search space used: 708181500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 134 (56.2 bits)