BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0016.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312010|ref|YP_003776102.1| protozoan/cyanobacterial globin...   168   2e-43

>gi|300312010|ref|YP_003776102.1| protozoan/cyanobacterial globin
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  168 bits (425), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 98/130 (75%), Gaps = 3/130 (2%)

Query: 21  SATALPAHAQKVDDSLYRDLGGLDVLTKVVDDTLALALADVRIKDTFKETDMKRLAKLIT 80
           S  A PAHA    D+L+ DLGGL V+ + V D +A  LAD RI+ TF  +++KR+  ++ 
Sbjct: 18  SLWAPPAHAA---DTLFADLGGLPVIRQTVHDFMANMLADARIRHTFDHSNLKRVEDMLV 74

Query: 81  EQFCELSGGPCKYSGDPMKEVHQGLALNNMQFNALVEDLQAAMDKSGIPSRTQNKLLALL 140
           EQFC LSGGPC Y+GDPMKEVHQGL L N  FNALVEDLQ AMDK+GIP RTQN+LLALL
Sbjct: 75  EQFCMLSGGPCTYTGDPMKEVHQGLKLTNADFNALVEDLQQAMDKNGIPFRTQNRLLALL 134

Query: 141 APMQRTVVTK 150
           APMQR  VT+
Sbjct: 135 APMQRDTVTR 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 375,357
Number of extensions: 12811
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)