BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0015.p
         (290 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312011|ref|YP_003776103.1| hypothetical protein Hsero_2699...   423   e-119

>gi|300312011|ref|YP_003776103.1| hypothetical protein Hsero_2699
           [Herbaspirillum seropedicae SmR1]
          Length = 341

 Score =  423 bits (1087), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/269 (78%), Positives = 233/269 (86%)

Query: 22  PDLGKLMATAGVVQVEGAGGGGLVPWATITGYGTRDSYGANVHYTYVGTQDYTLASYGVA 81
           PDL KL AT GV+QVEGAGGGGL PWA ITGYG+RDSYGAN HYTY+ TQDYTL SYGVA
Sbjct: 73  PDLAKLTATGGVIQVEGAGGGGLTPWALITGYGSRDSYGANAHYTYLATQDYTLRSYGVA 132

Query: 82  VGIADRVELSVAKQRFTGSLAPLNNLRIDQDIYGVKVKLAGDIVYDQDTWMPQLAAGVMV 141
           VGI DR+ELSVAKQ F G  APLN+L+I QDI GVK+KLAGD VYDQD W+PQ+AAGVM 
Sbjct: 133 VGILDRLELSVAKQEFYGGAAPLNDLKITQDIVGVKLKLAGDAVYDQDRWLPQIAAGVMF 192

Query: 142 KRNNGIGGLGAVTNVKDLGAKSDSGIDYYLAATKLFLDQSLLLNATVRATKANQMGILGF 201
           KRNNG+GGLG VT+VK LGA SD+GIDYYL+ATKL L QSLLLN TVR TKANQMG+LGF
Sbjct: 193 KRNNGVGGLGPVTSVKQLGAASDAGIDYYLSATKLLLAQSLLLNGTVRLTKANQMGLLGF 252

Query: 202 GGDKGDRYQAMLESSVAYLLNRQWVIGAEYRMKPRNLGADNEKDYYDAFVAWFPSKNLSL 261
           GGD+GDRYQAM E S AYL+ R   +G EYRMKPRNL AD EKDYYDAF+AWFPSKNLSL
Sbjct: 253 GGDRGDRYQAMGEFSAAYLIQRDLALGVEYRMKPRNLAADPEKDYYDAFLAWFPSKNLSL 312

Query: 262 TLAYVSLGDITIYNPKRQDGVYLSVQAGF 290
           TLAYV+LGDIT+YNPKRQ GVYLS+QAGF
Sbjct: 313 TLAYVALGDITVYNPKRQRGVYLSLQAGF 341


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 795,751
Number of extensions: 31782
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,222,130
Effective search space: 251758780
Effective search space used: 251758780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)