BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0012.p
         (234 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312013|ref|YP_003776105.1| hypothetical protein Hsero_2701...   266   2e-72

>gi|300312013|ref|YP_003776105.1| hypothetical protein Hsero_2701
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score =  266 bits (679), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 149/181 (82%), Gaps = 2/181 (1%)

Query: 54  LTVQVLDIAGAPVPNAVVYAEAVGGQAVPKSL-KQAEVEQKDVKFFPLVSVVQVGTPILF 112
           ++VQVLD AG P+PNAVVY E  G  A P    +Q E+EQK+  F PLV+VVQ GTPILF
Sbjct: 25  VSVQVLDAAGQPMPNAVVYVEPAGAAAPPAKAPRQVEIEQKNKTFMPLVTVVQTGTPILF 84

Query: 113 PNHDKVRHHVYSFSPAKTFELKLYSGVPTSPILFDKVGTVVLGCNIHDQMVAYVQVVNTP 172
           PNHD VRHHVYSFSPAKTFELKLYSGVP SP++FDK GTVVLGCNIHD+MVAYVQVVNTP
Sbjct: 85  PNHDNVRHHVYSFSPAKTFELKLYSGVPGSPVVFDKAGTVVLGCNIHDEMVAYVQVVNTP 144

Query: 173 FFGKTDMSGRVKLDGLVNGKYALKAWYFKMAPNEAAMEQPITYQGADLHASVKLNVKAVP 232
           FFG TD SG VKL+G+ NGKY LKAWYF M PNEAA+EQP+  QG D  AS+KLNVKAVP
Sbjct: 145 FFGVTDRSGSVKLEGVGNGKYTLKAWYFTMGPNEAAVEQPLQVQG-DGRASIKLNVKAVP 203

Query: 233 V 233
           +
Sbjct: 204 L 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 644,131
Number of extensions: 23974
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,231,600
Effective search space: 187203200
Effective search space used: 187203200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)