BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0011.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312014|ref|YP_003776106.1| transcription regulator protein...   285   2e-78
gi|300309619|ref|YP_003773711.1| transcription regulator protein...    59   3e-10

>gi|300312014|ref|YP_003776106.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 217

 Score =  285 bits (728), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/189 (73%), Positives = 162/189 (85%)

Query: 1   MVDTILDAMARVLVDRGYAKTNTNLVAEAAGISVGSLYQYFPNKDALIFALRERHVARML 60
           MVDTILDAM+RVLV+RGYAKTNTNLVAE+AGISVGSLYQYFPNKDALIFALRERH  RML
Sbjct: 17  MVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNKDALIFALRERHATRML 76

Query: 61  QLFEEVVAKMDASGSLVRDFEALIEALVAAHLVEPELNRILEEEFPSFHLPVSNHVRQRF 120
            LFE+ VA +D +G+L  DF+ +I A+VAAHL+EPELNRILEEEFP+++LPVS  +RQ F
Sbjct: 77  ALFEDAVAHIDDAGTLSSDFDQVISAVVAAHLLEPELNRILEEEFPAYNLPVSTEIRQGF 136

Query: 121 FEAIRGVLIKHRKSISAPDVDVAAFVVQRMLKALVNAVVLIAPPGLNAASVRSEIVPAVV 180
           FEAI  VL KHR SI+ PD+D+AAFV+QRMLKAL+ AVVL  P G+   SVRSEI+PAV+
Sbjct: 137 FEAIHRVLEKHRDSITTPDLDLAAFVLQRMLKALIKAVVLTGPGGVPPGSVRSEILPAVI 196

Query: 181 GYLTAQRSN 189
           GYLT  RS+
Sbjct: 197 GYLTLPRSD 205


>gi|300309619|ref|YP_003773711.1| transcription regulator protein
          [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 38/52 (73%)

Query: 1  MVDTILDAMARVLVDRGYAKTNTNLVAEAAGISVGSLYQYFPNKDALIFALR 52
          +V  IL+A  +VL+  G A+  T  VAE AG+SVGS+YQYFPNK A++F L+
Sbjct: 23 LVKAILEAAVQVLLREGAARFTTARVAERAGVSVGSIYQYFPNKAAILFRLQ 74


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 545,297
Number of extensions: 20708
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)