BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0004.p
         (253 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312024|ref|YP_003776116.1| esterase [Herbaspirillum serope...   399   e-112

>gi|300312024|ref|YP_003776116.1| esterase [Herbaspirillum
           seropedicae SmR1]
          Length = 282

 Score =  399 bits (1026), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/241 (80%), Positives = 208/241 (86%), Gaps = 1/241 (0%)

Query: 8   ELLSEHACFGGVQGFYKHDSQEIGLSMRFSVFTPPQAKQG-PVPVLFYLAGLTCTEETFM 66
           E LSEH CFGGVQG+Y+H S  IGL MRFSVF PPQA +G P+PVLFYLAGLTCTEETFM
Sbjct: 3   ETLSEHGCFGGVQGYYRHASPAIGLDMRFSVFVPPQASKGSPLPVLFYLAGLTCTEETFM 62

Query: 67  IKGGAQRVAAELGIMLVAPDTSPRGANIAGESDSWDFGVGAGFYLDATQAPWSKHYRMES 126
           IK GAQRVAAELG++LVA DTSPRGA IAGESDSWDFGVGAGFYLDATQAPWS+HYRMES
Sbjct: 63  IKAGAQRVAAELGMILVASDTSPRGAGIAGESDSWDFGVGAGFYLDATQAPWSQHYRMES 122

Query: 127 YVVQELRSLVVKEFAADAARAGVFGHSMGGHGALTLALRHPDVYRSVSAFAPIAAPSQCP 186
           YVV +LR  V+  F AD  R GVFGHSMGGHGALTLALRH DVYRSVSAFAPIAAP  C 
Sbjct: 123 YVVDDLRRAVLDNFPADPQRMGVFGHSMGGHGALTLALRHRDVYRSVSAFAPIAAPINCA 182

Query: 187 WGEKAFGNYLGSDRSAWLEHDASALMRKAVTPFPQGILVDQGLADKFLAEQLLPQEFEAA 246
           WG+KAF +YLG+DR AW +HDAS LMR   TPFPQGIL+DQGLADKFLAEQLLP+ FEAA
Sbjct: 183 WGQKAFSHYLGTDRQAWKQHDASELMRALQTPFPQGILIDQGLADKFLAEQLLPERFEAA 242

Query: 247 C 247
           C
Sbjct: 243 C 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 847,834
Number of extensions: 36865
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,226,865
Effective search space: 208567050
Effective search space used: 208567050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)