BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0001.p
         (1034 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312026|ref|YP_003776118.1| signal transduction protein con...  1443   0.0  
gi|300314042|ref|YP_003778134.1| signal transduction protein con...   413   e-116
gi|300311453|ref|YP_003775545.1| signal transduction containing ...   389   e-109
gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies...   389   e-109
gi|300310170|ref|YP_003774262.1| diguanylate cyclase/phosphodies...   370   e-103

>gi|300312026|ref|YP_003776118.1| signal transduction protein
            containing a membrane domain, an EAL and a GGDEF
            domain-containing protein [Herbaspirillum seropedicae
            SmR1]
          Length = 1106

 Score = 1443 bits (3735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 695/1029 (67%), Positives = 834/1029 (81%), Gaps = 1/1029 (0%)

Query: 1    LLFFVVFVIAVISAQTWWEVEQDRQLTIASEKSSSMVAVRSVEEHAERILIDIDHMLAST 60
            LL FV FV + I  QTWWE+ QDRQLTI +E++SS+ A RS++EHA R+  D++  + ST
Sbjct: 64   LLLFVAFVGSFIVVQTWWEIRQDRQLTIDAERASSLTAARSIQEHATRVFNDLEQTMWST 123

Query: 61   ALAIQTADQHILDDDVGLYQLLADEKQALAPVQSLRFVDLTGVSRASSMRVGATEIELND 120
            A+ +      +L++D GLY +LA  +Q L  V  LR+VD  G +RA+S+R   T     D
Sbjct: 124  AVQLHAGGPELLENDQGLYNVLASMQQRLPTVMVLRYVDRNGNTRATSLRSLDTSSIPED 183

Query: 121  LQLREVDANPALPHYFVGMLARSRYNQELVLPVARNLYMR-GQHVGMIVAELRVAYFFDF 179
             +L  VD NPA P+ FVG L RSRYN+ELVLPVA NLY R  + +G++VAELR A FFDF
Sbjct: 184  RKLTYVDGNPARPNLFVGQLMRSRYNRELVLPVAMNLYDRSARPIGLLVAELRAATFFDF 243

Query: 180  YKRITNYQAIVSLRKDDGSLMIRSPFEAAWLDKSLRDAKSMVYIRNGPPEGAFEEYSALT 239
            YKRITN++AIVSLR + GS+M+RSPFE  WLD +L DAKSM YIR G  EG+FEE S LT
Sbjct: 244  YKRITNFEAIVSLRTESGSMMLRSPFEERWLDVNLADAKSMTYIRAGGDEGSFEENSYLT 303

Query: 240  GEYLLFTYKKIPGAGMVAVYARRMDDVLSPWKSRTLNRILLSIGISGFIVLALIAFLIYY 299
            GE LLF Y+++    +VAVYARRM+DVL+PW+SRT NRILL+ GI GFI++ALI+FL+YY
Sbjct: 304  GEPLLFAYRRLEKWSLVAVYARRMNDVLAPWRSRTENRILLTTGILGFILIALISFLVYY 363

Query: 300  NYKQKRDDVLTESEHRYRKLYEEGNDPIVLLSPDMLYIDCNAAAVKFFGVADKQRIIGKK 359
             Y+++ D  L+ SE+RYRKLYEEGNDPIVL+S ++ Y+DCNAAA++FFGV DK+RIIG+K
Sbjct: 364  RYQRRLDHALSASEYRYRKLYEEGNDPIVLISAELRYLDCNAAALRFFGVPDKERIIGRK 423

Query: 360  VGLFSRQSALQLQQPDIAELIEKAIAGEPQQFEWVTIRRHKIIYTDVTINRTELDKGFAI 419
            VGLFSRQ +  ++QPDI EL+ + ++G+PQQFEWVT+RR+KII+TDVT+NR E ++G+AI
Sbjct: 424  VGLFSRQKSRHMEQPDIDELVARVLSGQPQQFEWVTVRRNKIIHTDVTLNRAEFERGYAI 483

Query: 420  FAILRDISARKRAELLQATQNRILHLVMTDADLEDILKEIVLFADSQIPQSICSILMLND 479
            FAILRDISARKRAELLQ+ QNR+LH+VM D +L+ +L EIV FAD+QIP   CS++++N+
Sbjct: 484  FAILRDISARKRAELLQSEQNRVLHMVMADDELDGVLYEIVNFADAQIPYGACSVMLVNE 543

Query: 480  DNTHFSAIISARLSDRMRHGYMSMPIAHGNGASSEAVLTRTPYVVGDIHTDPVMNNARQF 539
              +HF++++S R   R+      MPI HG G  +EA L R P +V +I  DP+  + R  
Sbjct: 544  QASHFTSVLSHRYPPRLIRALQGMPIRHGCGVGAEAALRRGPCIVANIAQDPITEHLRPL 603

Query: 540  IHLEEFPSCGSWPIIGKEGQVLGVFSALLKEHGIPSSEYLHLTGVAADLASVAIESRKAE 599
            I  E +PSCG+WPIIGKEGQ+LGVF+ALLKE+  PS+EYL L  +AADLASVAIESR+A+
Sbjct: 604  IDTEIYPSCGAWPIIGKEGQLLGVFAALLKENQAPSNEYLQLANIAADLASVAIESRRAD 663

Query: 600  ERIRHLAHYDELTGLPNRFLCTQHISNAIAHAEHRGGQVAVFLMDLDRFKNINDTFGHET 659
            ERIRHLAHYDELTGLPNRFLCTQH+SNAI HAEHR G VAV LMDLDRFKNINDTFGHET
Sbjct: 664  ERIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGMVAVILMDLDRFKNINDTFGHET 723

Query: 660  GEALLSEIALRFRHCLRELDILARVGGDEFIVLVDDYDDPLQLGEIAQKLLSVARKPFDI 719
            GEA+L EIA RFR+ LRELDILARVGGDEFIVLVDD+DDP+QLGEIAQKLL+ ARKPF I
Sbjct: 724  GEAVLQEIAQRFRNSLRELDILARVGGDEFIVLVDDFDDPVQLGEIAQKLLTEARKPFII 783

Query: 720  SGHECQLSASIGIATYPTDGANAQTLIKNADIAMYRAKHNGKDDYRFYSDEVNTHTVERI 779
             G E  LS SIGIATYP DG NAQTLIKNADIAMYRAKH+GKDDYRF+SDE+NT+TVERI
Sbjct: 784  DGQEAMLSVSIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRFFSDEINTNTVERI 843

Query: 780  ALETELRRAIERREFVVHYQPKVELASARIVGAEALVRWQHPVRGLLAPAEFIGLAEEAG 839
            ALE ELRRAIER EFVVHYQPK+ELA  RIVGAEALVRWQHP+RGLL P EFI LAEE  
Sbjct: 844  ALEAELRRAIERAEFVVHYQPKIELAEGRIVGAEALVRWQHPLRGLLPPGEFITLAEETR 903

Query: 840  LIDQIGLLVLDSACADIVKLTQLNLPFGRIAINLAGSQFNDDNLLADIQRVVQARGVSSA 899
            LIDQIGLLVLD AC DI  + Q  +  GRI+INL GSQF D+ LL DI+ VV   G   +
Sbjct: 904  LIDQIGLLVLDVACRDIGLMRQQQMTCGRISINLTGSQFGDERLLDDIKEVVDRHGTPPS 963

Query: 900  SLEFEITESMVMHNREQAIAIMDGIRALGFTISIDDFGTGYSSLAYLKRFPVDNVKIDRS 959
             LEFEITESMVMHNRE+AIAIMDGIRA GFTISIDDFGTGYSSLAYLKRFPV+ +KID+S
Sbjct: 964  CLEFEITESMVMHNRERAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFPVNTLKIDKS 1023

Query: 960  FITDIPHDANGSAIVQAIIAMAHALNLKVVTEGVETEVQLQALQVFGSDEYQGYFFSRPV 1019
            FI DIP + N SAIVQAIIAM+HALNLKVVTEGVETE QLQAL+ FGSDEYQGY+FS+PV
Sbjct: 1024 FINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEKQLQALREFGSDEYQGYYFSKPV 1083

Query: 1020 PHEQFVEIL 1028
            P+ QFV++L
Sbjct: 1084 PYAQFVQLL 1092


>gi|300314042|ref|YP_003778134.1| signal transduction protein
            containing a membrane domain, an EAL and a GGDEF
            domain-containing protein [Herbaspirillum seropedicae
            SmR1]
          Length = 948

 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/456 (44%), Positives = 299/456 (65%), Gaps = 4/456 (0%)

Query: 575  SSEYLHLTGVAADLASVAIESRKAEERIRHLAHYDELTGLPNRFLCTQHISNAIAHAEHR 634
            S E  H      D+ S+    ++ E  +   A  D LTGL NR +   H+  AI  AE +
Sbjct: 492  SGEVTHFVAALYDITSM----KRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGVAERQ 547

Query: 635  GGQVAVFLMDLDRFKNINDTFGHETGEALLSEIALRFRHCLRELDILARVGGDEFIVLVD 694
               + V  +DLDRFK +NDT GH+ G+ LL  +A R R  +RE D +AR+GGDEFI+++ 
Sbjct: 548  KQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGDEFIMILP 607

Query: 695  DYDDPLQLGEIAQKLLSVARKPFDISGHECQLSASIGIATYPTDGANAQTLIKNADIAMY 754
            + D+        Q+++     P  + GH   ++ S+G+A YP DG + +TLIK+ADIAMY
Sbjct: 608  EQDELTLDTRSLQRIMDAVAAPVTLGGHTLFMTCSVGVACYPNDGTDGETLIKHADIAMY 667

Query: 755  RAKHNGKDDYRFYSDEVNTHTVERIALETELRRAIERREFVVHYQPKVELASARIVGAEA 814
            R K  G+++++FY+  +N   +ER+ +E +LR A++  EF++HYQPKV+LAS R++G+EA
Sbjct: 668  RGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASGRVIGSEA 727

Query: 815  LVRWQHPVRGLLAPAEFIGLAEEAGLIDQIGLLVLDSACADIVKLTQLNLPFGRIAINLA 874
            L+RWQHP  G+++PA FIGLAEE GLI  IG  VL +AC    +          +++NL+
Sbjct: 728  LIRWQHPQLGMVSPARFIGLAEETGLILPIGAWVLRAACTQCRQWQLGGYADISVSVNLS 787

Query: 875  GSQFNDDNLLADIQRVVQARGVSSASLEFEITESMVMHNREQAIAIMDGIRALGFTISID 934
              QF   +L++ I  V++  G+   SLE E+TES++M + E AI I+ G++ LG  +SID
Sbjct: 788  VGQFLQKDLVSSIADVLEDTGLPPESLELELTESLMMTDVEHAIGILAGLKKLGVRLSID 847

Query: 935  DFGTGYSSLAYLKRFPVDNVKIDRSFITDIPHDANGSAIVQAIIAMAHALNLKVVTEGVE 994
            DFGTGYSSLAYLKRFP+D +KIDRSF+ DI  DA+ +AI  +II++A  L L+V+ EGVE
Sbjct: 848  DFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLRVIAEGVE 907

Query: 995  TEVQLQALQVFGSDEYQGYFFSRPVPHEQFVEILQR 1030
            T+ QL  L+ +G DE QGY FS PVP ++F +IL++
Sbjct: 908  TDEQLDYLRHYGCDEIQGYLFSPPVPADKFEQILRQ 943


>gi|300311453|ref|YP_003775545.1| signal transduction containing
            PAS/GGDEF/EAL domains protein [Herbaspirillum seropedicae
            SmR1]
          Length = 683

 Score =  389 bits (999), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/443 (48%), Positives = 286/443 (64%), Gaps = 15/443 (3%)

Query: 594  ESRKAEERIRHLAHYDELTGLPNRFLCTQHISNAIAHAEHRGGQVAVFLMDLDRFKNIND 653
            E + AE+ I HLA+YD LTGLPNR L T+ +  A+  A H      V  +DL+RFK IND
Sbjct: 232  ERKNAEKLIHHLAYYDALTGLPNRTLLTRTVDQALEEARHENLHGCVMFIDLNRFKPIND 291

Query: 654  TFGHETGEALLSEIALRFRHCLRELDILARVGGDEFIVLV--DDYDDPLQLGEIAQKLLS 711
            T GH  G+ LL E+A+R R  LRE D++AR+G DEF V +   D D P     +AQKLL+
Sbjct: 292  TLGHVAGDMLLVEVAMRLRRALREQDVVARLGADEFAVALFGIDKDSP---AYVAQKLLA 348

Query: 712  VARKPFDISGHECQLSASIGIATYPTDGANAQTLIKNADIAMYRAKHNGKDD---YRFYS 768
            +   PF I GHE ++ ASIG++ YP +  + +TL++ ADIAMYRAK  G+++   Y  YS
Sbjct: 349  LFDDPFFIDGHELRVGASIGVSLYPENATDTETLLRLADIAMYRAKQGGENNEGGYACYS 408

Query: 769  DEVNTHTVERIALETELRRAIERREFVVHYQPKVELASARIVGAEALVRWQHPVRGLLAP 828
            +E+N +T++ + +ET L  A E  E +++YQPKV++ +  I GAEALVRWQHP RGLL P
Sbjct: 409  EEMNRNTLDLLRIETGLLHAFEYNELLLYYQPKVDMQTLAITGAEALVRWQHPERGLLLP 468

Query: 829  AEFIGLAEEAGLIDQIGLLVLDSACADIVKLTQLNLPFGRIAINLAGSQFN---DDNLLA 885
             EFI +AEE GLI Q+   VLD+ C          LP  RIA+N+   +F     D + A
Sbjct: 469  GEFIPIAEETGLIVQLSDWVLDAVCRQARAWKDAGLPPIRIALNVTAREFTRSLPDRVGA 528

Query: 886  DIQRVVQARGVSSASLEFEITESMVMHNREQAIAIMDGIRALGFTISIDDFGTGYSSLAY 945
             ++R +    +S   LE EITESM+MH+ ++ I+IM+ I  LG T+S+DDFGTGYSSL+Y
Sbjct: 529  ALERHM----LSGEWLELEITESMLMHSTDRVISIMEKICGLGITVSLDDFGTGYSSLSY 584

Query: 946  LKRFPVDNVKIDRSFITDIPHDANGSAIVQAIIAMAHALNLKVVTEGVETEVQLQALQVF 1005
            LKRFP++ +KIDRSF   IP D N  AI  AII +A  L  KV+ EGVE E Q   L+  
Sbjct: 585  LKRFPINTLKIDRSFTMGIPDDTNDCAIASAIIGIAKQLRHKVIAEGVEDEKQFNFLREA 644

Query: 1006 GSDEYQGYFFSRPVPHEQFVEIL 1028
            G +E QGY FSRPVP   F  +L
Sbjct: 645  GCNELQGYIFSRPVPAPDFHAML 667


>gi|300312904|ref|YP_003776996.1| diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor domains
            protein [Herbaspirillum seropedicae SmR1]
          Length = 701

 Score =  389 bits (998), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/430 (44%), Positives = 290/430 (67%), Gaps = 3/430 (0%)

Query: 592  AIESRKAEE-RIRHLAHYDELTGLPNRFLCTQHISNAIAHAEHRGGQVAVFLMDLDRFKN 650
            AI  RKA E  +RH A +D LTGLPNR +  +H+  A+  A  +G   AV  +DLD+FK 
Sbjct: 251  AITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAVAFVDLDQFKF 310

Query: 651  INDTFGHETGEALLSEIALRFRHCLRELDILARVGGDEFI-VLVDDYDDPLQLGEIAQKL 709
            IND+ GH+ G+ LL  +A R + CLRE D++AR GGDEF+ VL +  +    + E+ Q++
Sbjct: 311  INDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGEAGIAEVMQRI 370

Query: 710  LSVARKPFDISGHECQLSASIGIATYPTDGANAQTLIKNADIAMYRAKHNGKDDYRFYSD 769
            L+   +P+     E Q++ASIG++ YP DG + ++L+K+AD AMYRAK  G+++++F++ 
Sbjct: 371  LAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQFFAP 430

Query: 770  EVNTHTVERIALETELRRAIERREFVVHYQPKVELASARIVGAEALVRWQHPVRGLLAPA 829
             +++    R+ +   LRRA+++ EF ++YQPK+ L   R++GAEAL+RW+ P +G++ P 
Sbjct: 431  WMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWESPQQGMVPPD 490

Query: 830  EFIGLAEEAGLIDQIGLLVLDSACADIVKLTQLNLPFGRIAINLAGSQFNDDNLLADIQR 889
             FI  AEEAGLI  IG  VL +AC       Q  LP   +A+NL+  Q N  +L   +  
Sbjct: 491  RFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQLN-QSLPDFVAG 549

Query: 890  VVQARGVSSASLEFEITESMVMHNREQAIAIMDGIRALGFTISIDDFGTGYSSLAYLKRF 949
            V+   G++++ LE EITE++VM + E+++A +  ++ LG  IS+DDFGTGYSSL+YL+RF
Sbjct: 550  VLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYLRRF 609

Query: 950  PVDNVKIDRSFITDIPHDANGSAIVQAIIAMAHALNLKVVTEGVETEVQLQALQVFGSDE 1009
            PVD +KID+SF+ DI  DA+ +AIV+AII++AH LNL+V+ EGVE E Q   L+    DE
Sbjct: 610  PVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKENACDE 669

Query: 1010 YQGYFFSRPV 1019
             QGY+F +P+
Sbjct: 670  VQGYYFGKPM 679


>gi|300310170|ref|YP_003774262.1| diguanylate
            cyclase/phosphodiesterase A protein [Herbaspirillum
            seropedicae SmR1]
          Length = 1002

 Score =  370 bits (949), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 250/811 (30%), Positives = 404/811 (49%), Gaps = 23/811 (2%)

Query: 218  KSMVYIRN---GPPEGAFEEYS-ALTGEYLLFTYKKIPGAGMVAVYARRMDDVLSPWKSR 273
            K+M Y+     G P     E   A + EY  F      G      + RR     + W   
Sbjct: 174  KTMEYLAEDLLGQPHSILCEADYAASEEYTCFWRDVSLGRFFSGRFPRRTRSGRTIWWEA 233

Query: 274  TLNRILLSIGISGFIVLALIAFLIYYNYKQKRDDVLTESEHRYRKLYEEGNDPIVLLSPD 333
            T + +L + G +  ++   I   + Y   +++ D   E  H       E ++ +++    
Sbjct: 234  TYSPLLDAHGKAERVIC--IGTDVTYRVTREKSD--REHLHLLSLGINETDNAVLITDDQ 289

Query: 334  MLYIDCNAAAVKFFGVADKQRIIGKKVG-LF-SRQSALQLQQPDIAELIE-KAIAGEPQQ 390
               +  N    +  G  + Q++IG+  G LF SR + ++  +    EL++ ++   E   
Sbjct: 290  NRIVFHNTGFTRMLGF-ESQQVIGRLPGELFASRPTFVKSLERCHGELVQGRSYHTE--- 345

Query: 391  FEWVTIRRHKIIYTDVTINRTELDKGFAIFAI--LRDISARKRAELLQATQNRILHLVMT 448
             E +   + + ++    +N      G  I A+  + DI+  K  E+LQ    R+L+ +  
Sbjct: 346  -ELIHDMQEQPVWISAVVNPILDGAGKLIHAVCVMTDITNTKVHEVLQ---YRVLNAMAR 401

Query: 449  DADLEDILKEIVLFADSQIPQSICSILMLNDDNTHFSAIISARLSDRMRHGYMSMPIAHG 508
            D+ L + +  +    +   P+ I S+L + D++     + +  L +        + +   
Sbjct: 402  DSSLSEQMNLLCEEVERVAPEVIASVLRV-DEHGCLRTLAAPSLPEAYSKAIDGLHVGPM 460

Query: 509  NGASSEAVLTRTPYVVGDIHTDPVMNNARQFIHLEEFPSCGSWPIIGKEGQVLGVFSALL 568
             G    A  T    +  DI TDP  N+ +         +C S PI    GQV+G F    
Sbjct: 461  VGCCGSAAYTGQTVISEDIQTDPHWNDYKHLALPHGLRACWSTPIKSASGQVIGTFGFYY 520

Query: 569  KEHGIPSSEYLHLTGVAADLASVAIESRKAEERIRHLAHYDELTGLPNRFLCTQHISNAI 628
            +  G PS+ +  L      L ++AIE   A  RI  LA YD LTGLPNR L       AI
Sbjct: 521  RHPGQPSAFHHLLVEAGLHLCALAIEREDARARIHQLAFYDSLTGLPNRSLLLVQAGQAI 580

Query: 629  AHAEHRGGQVAVFLMDLDRFKNINDTFGHETGEALLSEIALRFRHCLRELDILARVGGDE 688
            A AE     VAV  +DLDRFK +ND+ GH+ G+ LL  +A R +   R  DI+ R+ GDE
Sbjct: 581  AAAERNCSTVAVMFIDLDRFKQVNDSLGHQAGDELLRTVATRLQSQARRSDIVGRLSGDE 640

Query: 689  FIVLVDDYDDPLQLGEIAQKLLSVARKPFDISGHECQLSASIGIATYPTDGANAQTLIKN 748
            F+V++  YD    L E+ +++      P  I+G     SASIG+A +P +G + +TL+  
Sbjct: 641  FVVVLTQYDTQ-HLTEVVKRIQERLAMPCHINGTPLNPSASIGVAIFPDNGNDIETLLHR 699

Query: 749  ADIAMYRAKHNGKDDYRFYSDEVNTHTVERIALETELRRAIERREFVVHYQPKVELASAR 808
            ADIAMY+AK   +  + F+S+E+N+   ER+ALE+ LR A+   +  +++QP+++L    
Sbjct: 700  ADIAMYQAKAVNRGRFSFFSEEMNSMAQERLALESALRDALRGGDLELNFQPQIKLHDQS 759

Query: 809  IVGAEALVRWQHPVRGLLAPAEFIGLAEEAGLIDQIGLLVLDSACADIVKLTQLNLPFGR 868
            + G EAL RW HP  G ++P  FI +AEE GLI ++G   L+ AC  +    +  +    
Sbjct: 760  LHGVEALARWHHPQLGQISPGRFIPIAEECGLIGELGKWALEEACFQLSDWRRRGIQVPS 819

Query: 869  IAINLAGSQFNDDNLLADIQRVVQARGVSSASLEFEITESMVMHNREQAIAIMDGIRALG 928
            I++NL+ + F+D +L   +  +++   +  + L  EITE+++M         +  + ALG
Sbjct: 820  ISVNLSATNFHDLDLPQFVTGLLRRYALEPSDLTLEITETVLMDTNPSTSQTIAAVHALG 879

Query: 929  FTISIDDFGTGYSSLAYLKRFPVDNVKIDRSFITDIPHDANGSAIVQAIIAMAHALNLKV 988
              +++DDFGTGYSSL YL++ PV  +K+D+SF+ D+  D   SA+  A+I +  +L L V
Sbjct: 880  IPLAMDDFGTGYSSLGYLRKLPVSELKLDQSFVRDMAKDPAVSALTNAVIRIGESLKLTV 939

Query: 989  VTEGVETEVQLQALQVFGSDEYQGYFFSRPV 1019
            V EGVE   Q   L   G D  QGY FSRP+
Sbjct: 940  VAEGVEDAEQYALLISQGCDVAQGYLFSRPM 970


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 3,073,304
Number of extensions: 129594
Number of successful extensions: 466
Number of sequences better than 1.0e-08: 44
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 48
Length of query: 1034
Length of database: 1,619,870
Length adjustment: 95
Effective length of query: 939
Effective length of database: 1,170,045
Effective search space: 1098672255
Effective search space used: 1098672255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)