BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0047.p
         (133 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311805|ref|YP_003775897.1| two component hybrid sensor his...   158   2e-40
gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine...    64   3e-12

>gi|300311805|ref|YP_003775897.1| two component hybrid sensor
            histidine kinase/response regulator protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1278

 Score =  158 bits (399), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/119 (64%), Positives = 91/119 (76%)

Query: 11   QADAAGLHILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQHDFDVLFTDVSL 70
            Q DA GL +LVVEDN+DS QLVCELL  LGH+A GV S EEAL  LE+  FDVLFTDV+L
Sbjct: 1158 QEDAGGLRLLVVEDNIDSQQLVCELLETLGHQARGVISGEEALQALEEQGFDVLFTDVNL 1217

Query: 71   PGMSGLELAKRTSEKTPALKIIFASGYGAQISKNIGPGTFSLPKPYDIDQLQDILDNIG 129
            PGMSG+ELAK    + P L +IFASGYG  +++N+G    +LPKPYDIDQLQ+ILD I 
Sbjct: 1218 PGMSGVELAKAALGRFPDLAVIFASGYGTMVARNVGFAAHALPKPYDIDQLQEILDKIA 1276


>gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 552

 Score = 64.3 bits (155), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 18  HILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQ-HDFDVLFTDVSLPG-MSG 75
           HILVV+D L+  +L   +L  LG+R   V S  EAL  +      D+LFTD+ +PG M+G
Sbjct: 430 HILVVDDRLEVAELAQTMLESLGYRVSMVNSPAEALQLIRSGRPVDLLFTDLIMPGSMNG 489

Query: 76  LELAKRTSEKTPALKIIFASGYGAQ-ISKNIGPGTFS-LPKPYDIDQL 121
           + LA+      P +K++  +GY ++ + ++   G F  L KPY  D+L
Sbjct: 490 VVLAREAKRMLPTIKVLLTTGYASESLERHGADGEFPVLDKPYRHDEL 537


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.134    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 386,169
Number of extensions: 14734
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 5
Length of query: 133
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 58
Effective length of database: 1,264,745
Effective search space: 73355210
Effective search space used: 73355210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)