BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0046.p (349 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311808|ref|YP_003775900.1| two component sensor histidine ... 102 5e-23 gi|300313070|ref|YP_003777162.1| two component sensor histidine ... 89 8e-19 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 87 1e-18 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 79 4e-16 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 79 5e-16 >gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 127/248 (51%), Gaps = 16/248 (6%) Query: 105 LAVQTFSVNRALEVQRRREEYLSFIAHDLRTPLNAVALASKVLESTLGAQNADPRAARMI 164 L Q + +A V R ++E+L+ ++H+LRTPLNA+ ++ L L + R + + Sbjct: 33 LETQRAARRQADSVTRLKDEFLATLSHELRTPLNAIVGWTQYL---LNDHSDADRLVKGL 89 Query: 165 KVLQRNVQSMSGLVAKVIEENDNMKTESGVKLERRNIDLWPLVESMVYDLNPVAGTGSTR 224 +V++RN + + +V +++ + + + ++LE R +DL + E + + P A Sbjct: 90 QVIERNARLQAQMVEDLLDMSRMLAGK--LRLETRPMDLASVAEEAIAAVRPAAEARQIE 147 Query: 225 LLNDVPEDLVIYADANLLRRMMQNLIANAITHTP-QGEVVIGAAPTLDGAGIECWVSDNG 283 L + + VI D L++++ NL+ NAI TP QG V + D +E VSDNG Sbjct: 148 LHPALGQGGVILGDPARLQQVVWNLLMNAIKFTPRQGRVSLSLRQHDDTVALE--VSDNG 205 Query: 284 MGISKDRLALIFEKFETETKDHG-------GLGLGLAIFKTFVEAHEGSFDVVSE-PGKG 335 GI + L +F++F E G GLGLGLAI + VE H G S PG G Sbjct: 206 RGIKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAASAGPGMG 265 Query: 336 SRFSFILP 343 + F+ LP Sbjct: 266 AAFTVTLP 273 >gi|300313070|ref|YP_003777162.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 939 Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 123/264 (46%), Gaps = 29/264 (10%) Query: 98 VFDSAIGLAVQTFSVNR-------ALEVQRRREEYLSFIAHDLRTPLNAVALASKVLEST 150 +F S I +A++ +E +R R LS I+HDLRTPL ++ ++ VL Sbjct: 677 IFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSADVL--- 733 Query: 151 LGAQNA--DPRAARMIKVLQRNVQSMSGLVAKVIEENDNMKTESGVKLERRNIDLWPLVE 208 A NA D A M + + Q M GL+ ++ D + ++GV R W +E Sbjct: 734 --AANARLDDDARAMARTISEQSQKMVGLMNNLL---DMARLQAGVVTLNRQ---WNALE 785 Query: 209 SMVYD-LNPVAGTGSTRLLND--VPEDLVIYADANLLRRMMQNLIANAITHTPQGEVVIG 265 + L +A R ++ PE ++ DA LL R++ NL+ NAI ++P G + Sbjct: 786 ELAGSALRLLAKALEGRQVDTRIAPELPLLRVDAVLLERVLANLVENAIKYSPPGTPIGI 845 Query: 266 AAPTLDGAG---IECWVSDNGMGISKDRLALIFEKFETETKDHG--GLGLGLAIFKTFVE 320 +A G G ++ V D G G FEKF + G+GLGLAI + +E Sbjct: 846 SAHVEHGDGAPQVKVCVMDQGRGFPPTMTQHAFEKFTRGDNESATPGVGLGLAICRAIIE 905 Query: 321 AHEGSFDVV-SEPGKGSRFSFILP 343 AH+G + E G+G+ F LP Sbjct: 906 AHQGRIWIAPQEAGQGATVCFTLP 929 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 21/233 (9%) Query: 122 REEYLSFIAHDLRTPLNAVALASKVLESTLGAQNADPRAARMIKVLQRNVQSMSGLVAKV 181 R +LS ++H++RTP+NAV + +L ST D + A K ++ + ++ G+V V Sbjct: 87 RGAFLSTMSHEIRTPMNAVLGMAGLLRST----RLDTQQAEFAKAIEDSAHALLGIVNDV 142 Query: 182 IEENDNMKTESG-VKLERRNIDLWPLVESMVYDLNPVAGTGSTRLL----NDVPEDLVIY 236 + D K + G + + DL +VE+ L+ A RLL + +P LV Sbjct: 143 L---DFSKIDVGKMDIAVVEFDLAKVVEASAEALSFKAREKRVRLLAHLDSRLPPRLV-- 197 Query: 237 ADANLLRRMMQNLIANAITHTPQGEVVIGAAP---TLDGAGIECWVSDNGMGISKDRLAL 293 D +R+++ NL+ NA+ T GEV++ T D + V D+G+G+ +D L Sbjct: 198 GDPGRIRQILLNLLGNALKFTHAGEVLLRVQALQVTSDHCRVRFEVRDSGIGMDEDTLRR 257 Query: 294 IFEKF----ETETKDHGGLGLGLAIFKTFVEAHEGSFDVVSEPGKGSRFSFIL 342 +F F + T+ +GG GLGL+I K VE GS V S G GS F F L Sbjct: 258 LFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVESALGTGSCFWFEL 310 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 16/252 (6%) Query: 103 IGLAVQTFSVNRALEVQRR---REEYLSFIAHDLRTPLNAVALASKVLESTLGAQNADPR 159 +G+ Q F+ A+ ++R R E+++ ++H+LRTPL + + LE G D Sbjct: 227 VGMLAQDFN-QLAMTLERNEKLRREFMADVSHELRTPLAILNGQLEALED--GVLQPD-- 281 Query: 160 AARMIKVLQRNVQSMSGLVAKVIEENDNMKTESGVKLERRNIDLWPLVESMVYDLNPVAG 219 A+ ++ L+ V+ ++ LV + + + + + R +IDL PL+ + Sbjct: 282 -AQTLRSLKSEVEHLNKLVGDLYDLS--LADAGALTYRRADIDLAPLLRDSAALYSDRFS 338 Query: 220 TGSTRLLNDVPEDLVIYADANLLRRMMQNLIANAITHTPQGEVVIGAAPTLDGAGIECWV 279 RL ++P + ++ DA L++++ NL N++ +T G + A L Sbjct: 339 QRGMRLSCELPASMPVHGDAARLQQLLSNLFENSLRYTDAGGRLQVHA-HLQQQHWHLVF 397 Query: 280 SDNGMGISKDRLALIFEKF----ETETKDHGGLGLGLAIFKTFVEAHEGSFDVVSEPGKG 335 D+ G+ + +A +FE+F + + GG GLGLAI + V+AH+G+ + P G Sbjct: 398 DDSEPGVPPEVMARLFERFFRVEASRNRASGGAGLGLAICRRIVDAHQGTIGASASPLGG 457 Query: 336 SRFSFILPNRPE 347 R +LP R E Sbjct: 458 LRVVVVLPARLE 469 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 128/270 (47%), Gaps = 25/270 (9%) Query: 89 GKPFHVINLVFDSAIGLAVQTFSVNRALEVQRR---REEYLSFIAHDLRTPLNAVALASK 145 G+P VI + D + + V+ L+ ++ + +L+ ++H++RTP+N V + Sbjct: 861 GRPVRVICINLDITQRIEFENNLVDARLKAEQANSAKSLFLASVSHEIRTPMNGVLGMIQ 920 Query: 146 VLESTLGAQNADPRAARMIKVLQRNVQSMSGLVAKVIEENDNMKTESGVKLERRNIDLWP 205 +L+ T P A+ + + + + S L + + ++L+ + +L Sbjct: 921 LLQRT------QPLPAQQDYLDKAEISAKSLLNLLNDLLDFSKMDAKQLQLDLQAFELER 974 Query: 206 LVESMVYDLN---PVAGTGSTRLLN-DVPEDLVIYADANLLRRMMQNLIANAITHTPQGE 261 ++ L P AG L+ +P LV DA+ L++++ NL NA+ T QG Sbjct: 975 FGHNLAAVLAGSPPQAGVSLHIALDPQLPRRLV--GDAHRLQQVLVNLTGNALKFTHQGH 1032 Query: 262 VVIGAAPTLD-----GAGIECWVSDNGMGISKDRLALIFEKFE----TETKDHGGLGLGL 312 + + LD + VSD G+GI+ DRL IF+ F + T+ +GG GLGL Sbjct: 1033 IDVHFT-RLDPLPGRTVALRVEVSDTGIGIAADRLDDIFDAFTQAEASTTRRYGGTGLGL 1091 Query: 313 AIFKTFVEAHEGSFDVVSEPGKGSRFSFIL 342 AI K V G V SEPG+GSRF F L Sbjct: 1092 AISKHLVGLMGGQLQVSSEPGRGSRFWFDL 1121 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,089,582 Number of extensions: 46001 Number of successful extensions: 277 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 216 Number of HSP's successfully gapped: 36 Length of query: 349 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 263 Effective length of database: 1,212,660 Effective search space: 318929580 Effective search space used: 318929580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)