BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0043.p
         (220 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310999|ref|YP_003775091.1| hypothetical protein Hsero_1670...    56   2e-09

>gi|300310999|ref|YP_003775091.1| hypothetical protein Hsero_1670
           [Herbaspirillum seropedicae SmR1]
          Length = 167

 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 82/174 (47%), Gaps = 21/174 (12%)

Query: 28  SRRHVL--IGLAALVAEAG-FWSNPLFSNAQTPAVPAAAPPPSPEALAFLNFSKRITGHA 84
           SRR VL  +GL    + AG F + P    AQ  A  A    P  +   F+  S+++T   
Sbjct: 5   SRRRVLKVVGLMTGASAAGLFGALPRLVTAQNNATTA----PLDD---FIQVSQQLTERK 57

Query: 85  DLKTDTGVRIEAAMRKTYPDFAAQSARLGALLQDGQEPKALLAA------ATDAGLRDLT 138
           DL    G  +  A+ KT  D A++   L  LLQ   +P ALL A      A       L 
Sbjct: 58  DLSPRLGAALLLALGKTEKDLASRLPALKGLLQ--AQP-ALLQAERLAFPAEHGDSEKLA 114

Query: 139 LAIVAAWYTGTIGKGKQAVVVSYAEALMYRPVSDGQTVPTYCNYGPVW-WTKAP 191
             I+ AWY G +GKGKQA  V+Y   L    VS G+ VP   +YGP   W++ P
Sbjct: 115 RVILGAWYEGVVGKGKQAQYVTYLNTLSNTLVS-GKLVPPSFSYGPCGSWSRQP 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 515,918
Number of extensions: 18328
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,231,600
Effective search space: 169960800
Effective search space used: 169960800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)