BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0039.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311819|ref|YP_003775911.1| glycogen synthase [Herbaspirill...   331   5e-92

>gi|300311819|ref|YP_003775911.1| glycogen synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 529

 Score =  331 bits (848), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 152/241 (63%), Positives = 193/241 (80%), Gaps = 1/241 (0%)

Query: 1   VHANDWHAGLIPFLLKTAGLNHVASMLTIHNLAFQGNYDWALAGQLGLDRDAQAMSSLEY 60
           VHANDWHAGLIP LLK  GL+H+ +MLTIHNLAFQGN+    A Q+G+ +       +EY
Sbjct: 138 VHANDWHAGLIPCLLKLRGLDHIGTMLTIHNLAFQGNFALESAEQIGIPQHLLTGDGVEY 197

Query: 61  WGKISFLKAGLQHADCVTTVSKTYAQEILTPRFGYGMEGVLNERRAALRAIPNGIDSKVW 120
           WGK+SFLKAG++ +DCV+TVS+ YA EI+TPRFG GM+G+L+ R+  LRAIPN ID+++W
Sbjct: 198 WGKLSFLKAGIRFSDCVSTVSRNYAHEIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELW 257

Query: 121 NPEADPLLRHSFNVGDMRGKTLSKCDLQDMFGLLPVDPFAPIVGIGSRMSHQKMADVVLQ 180
           NP  DPL+  +F+VG+M+GK   K DLQ +FG LPVDPFAP++G+GSR+SHQKMADVV++
Sbjct: 258 NPADDPLIARNFSVGNMKGKAACKRDLQKLFG-LPVDPFAPVMGMGSRLSHQKMADVVIE 316

Query: 181 TLPTVLDRHERMQLVVLGCGERSYEEGFLDLACRYPGRVGVHIGYDEERAHALHAGCDML 240
            LP +++RH RMQ+VVLGCG+  YE+  L LA RY GR+ VHIGYDE RAHALHAG DML
Sbjct: 317 ALPGIMERHPRMQMVVLGCGDHDYEKSLLALAQRYAGRIAVHIGYDERRAHALHAGSDML 376

Query: 241 L 241
           L
Sbjct: 377 L 377


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 893,279
Number of extensions: 36851
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)