BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0036.p
         (181 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311642|ref|YP_003775734.1| 1,4-alpha-glucan branching prot...   139   1e-34
gi|300311818|ref|YP_003775910.1| 1,4-alpha-glucan branching prot...    88   5e-19

>gi|300311642|ref|YP_003775734.1| 1,4-alpha-glucan branching protein
           [Herbaspirillum seropedicae SmR1]
          Length = 819

 Score =  139 bits (350), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/182 (50%), Positives = 108/182 (59%), Gaps = 32/182 (17%)

Query: 22  DLQLASSLQQGRLGDPFALLGPRYTA-------------------LPXPFAL-LGPRYTA 61
           D  L + L QGRLGDPFALLGPR  A                    P   A+ +  R +A
Sbjct: 38  DESLVARLMQGRLGDPFALLGPREIADAPEATQKAKAKRLRLCCYFPGASAVQVYARTSA 97

Query: 62  LPGPGES-DPHGVLLGNLAQ--PATMNA-------AEGSANGIFYGEVNLPVQAHHE-IP 110
            P    + D  G LLG+L +  PAT          A    +G+F+GEV LP +A    IP
Sbjct: 98  APDELHAPDSTGSLLGSLHEWSPATGQGESDHDQEAPRQRSGVFFGEVKLPRRAVQPPIP 157

Query: 111 YVLHVAWPGKNGKREEVQITEDPYAFGLLVSDFDLHLFREGRHRQLGRCLGSQVMRIDGV 170
           YV HV W G +G RE +QITED YAFGLL+SDFDLHLFREGRHRQL RCLGSQVM+IDGV
Sbjct: 158 YVFHVTWRGADG-RETLQITEDAYAFGLLLSDFDLHLFREGRHRQLARCLGSQVMQIDGV 216

Query: 171 DG 172
           +G
Sbjct: 217 EG 218


>gi|300311818|ref|YP_003775910.1| 1,4-alpha-glucan branching protein
           [Herbaspirillum seropedicae SmR1]
          Length = 804

 Score = 87.8 bits (216), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 82/149 (55%), Gaps = 6/149 (4%)

Query: 25  LASSLQQGRLGDPFALLGPRYTALPXPFALLGPRYTALPGPGESDPH-GVLLGNLAQPAT 83
           +  +L  GRL  PF LLGPRY +     A +   +           H GVLL  L Q   
Sbjct: 53  MLEALLAGRLTQPFDLLGPRYASAKGDGAAVRCFHPGAEAVRVRCRHSGVLLAELQQ--- 109

Query: 84  MNAAEGSANGIFYGEVNLPVQAHHEIPYVLHVAWPGKNGKREEVQITEDPYAFGLLVSDF 143
               +G  +G F G V    Q  HE+PYVL V W   +G R  VQ TEDPYAFGLL+ + 
Sbjct: 110 -YPVDGQPSGFFSGLVPGLEQRRHEVPYVLEVDWRIPDGSR-SVQSTEDPYAFGLLLGEL 167

Query: 144 DLHLFREGRHRQLGRCLGSQVMRIDGVDG 172
           DLHL +EGRHRQL  CLG++ M IDGV G
Sbjct: 168 DLHLLQEGRHRQLADCLGARPMEIDGVPG 196


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 676,813
Number of extensions: 31005
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 181
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 102
Effective length of database: 1,245,805
Effective search space: 127072110
Effective search space used: 127072110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)