BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0035.p
         (77 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311642|ref|YP_003775734.1| 1,4-alpha-glucan branching prot...   105   1e-24
gi|300311818|ref|YP_003775910.1| 1,4-alpha-glucan branching prot...    68   1e-13

>gi|300311642|ref|YP_003775734.1| 1,4-alpha-glucan branching protein
           [Herbaspirillum seropedicae SmR1]
          Length = 819

 Score =  105 bits (261), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 55/63 (87%), Gaps = 1/63 (1%)

Query: 9   IPYVLHVAWPGKNGKREEVQITEDPYAFGLLVSDFDLHLFREGRHRQLGRCLGSQVMRID 68
           IPYV HV W G +G RE +QITED YAFGLL+SDFDLHLFREGRHRQL RCLGSQVM+ID
Sbjct: 156 IPYVFHVTWRGADG-RETLQITEDAYAFGLLLSDFDLHLFREGRHRQLARCLGSQVMQID 214

Query: 69  GVD 71
           GV+
Sbjct: 215 GVE 217


>gi|300311818|ref|YP_003775910.1| 1,4-alpha-glucan branching protein
           [Herbaspirillum seropedicae SmR1]
          Length = 804

 Score = 68.2 bits (165), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 49/67 (73%), Gaps = 1/67 (1%)

Query: 4   QAHHEIPYVLHVAWPGKNGKREEVQITEDPYAFGLLVSDFDLHLFREGRHRQLGRCLGSQ 63
           Q  HE+PYVL V W   +G R  VQ TEDPYAFGLL+ + DLHL +EGRHRQL  CLG++
Sbjct: 129 QRRHEVPYVLEVDWRIPDGSRS-VQSTEDPYAFGLLLGELDLHLLQEGRHRQLADCLGAR 187

Query: 64  VMRIDGV 70
            M IDGV
Sbjct: 188 PMEIDGV 194


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.142    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 248,944
Number of extensions: 8365
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 2
Length of query: 77
Length of database: 1,619,870
Length adjustment: 48
Effective length of query: 29
Effective length of database: 1,392,590
Effective search space: 40385110
Effective search space used: 40385110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 123 (52.0 bits)