BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0032.p
         (549 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311817|ref|YP_003775909.1| glycogen debranching enzyme pro...   796   0.0  
gi|300311816|ref|YP_003775908.1| malto-oligosyltrehalose trehalo...    60   6e-10

>gi|300311817|ref|YP_003775909.1| glycogen debranching enzyme
           protein [Herbaspirillum seropedicae SmR1]
          Length = 753

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/568 (68%), Positives = 452/568 (79%), Gaps = 19/568 (3%)

Query: 1   VIYEAHVRGISMMRDGVMPHERGTFAALGHPDFIAHLQKLGVTTLELMPVHAFLQENFLL 60
           VIYEAHV+GIS +R+ ++PHERGTFAAL  P FI HL +LGVTTLELMPVHAFLQ++FL+
Sbjct: 166 VIYEAHVKGISRLREDLLPHERGTFAALADPAFIDHLLRLGVTTLELMPVHAFLQDSFLV 225

Query: 61  QRDLRNYWGYSTLGFFAPEPAYLSTGDLNELRMAVRHFHAAGIEVILDVVYNHTCSGSEL 120
           +R L NYWGYSTL +FAPEP YLS GD NELRMAVR  H+AGIEVILDVVYNHT  GSEL
Sbjct: 226 ERGLHNYWGYSTLSYFAPEPGYLSMGDPNELRMAVRRLHSAGIEVILDVVYNHTSCGSEL 285

Query: 121 GPTLSMRGLDNASYYRLLPGEERYYINDTGCGNTVNMSHPRVIQLVLDSLRYWAEAFDID 180
           GPTLS RGLDNASY+RLLPG+ERY+INDTGCGNT+N+SHPRV+Q+VLDSLRYWA++F ID
Sbjct: 286 GPTLSFRGLDNASYFRLLPGQERYHINDTGCGNTLNLSHPRVLQMVLDSLRYWAQSFHID 345

Query: 181 GFRFDLCSTLGREPNGFDPHSGFFDALMQDPVLSQLKLIAEPWDIGPGGYQLGNHPPRFA 240
           GFRFDL STLGREP+GFDP SGFFDAL+QDPVLS+LKLI+EPWDIGPGGYQLGNHP RF 
Sbjct: 346 GFRFDLGSTLGREPHGFDPGSGFFDALLQDPVLSRLKLISEPWDIGPGGYQLGNHPARFG 405

Query: 241 EWNDKFRDAVRHFWAGGEGLRGEFAGRMLGSSDLFDHHHRKPWASVNFIASHDGFTLRDL 300
           EWNDKFRD +R FW G E +RG FA RM+GS++LF+HH RKPWAS+NFIASHDGFTLRDL
Sbjct: 406 EWNDKFRDDMRKFWKGDEAMRGAFAQRMMGSAELFEHHRRKPWASINFIASHDGFTLRDL 465

Query: 301 VSYETKHNEANGENGNDGHNENYSANWGVEGPTDNPEILQLRATVQRSMLTCVFLGQGTP 360
           VSY  KHNEANGEN NDGHN+N S NWG EG TD+  IL  RA VQR+ML    L QGTP
Sbjct: 466 VSYNGKHNEANGENNNDGHNDNASYNWGAEGDTDDAAILAKRACVQRAMLASTLLAQGTP 525

Query: 361 MLLAGDEFHRTQRGNNNAYCQDNDISWVDWKNAASEEGQALTTYVGRLTAIRRDFPVLQG 420
           MLLAGDEFHR+Q GNNNAYCQDN+ISWV+W  A S EG AL+ +VGR+TAIRRDF VL+ 
Sbjct: 526 MLLAGDEFHRSQGGNNNAYCQDNEISWVNWDQARSPEGAALSAFVGRVTAIRRDFEVLRA 585

Query: 421 DRFLHGNREIEPGLKDVTWFDERATPISVEDWQNPVARALTLQCAGAGNDD--------P 472
             FLHG++ +  GL DV WFDE A P+S EDW NPVARA+TLQ AG   +          
Sbjct: 586 SYFLHGSQMVADGLPDVAWFDEAARPVSSEDWNNPVARAITLQLAGKPQESHKQLSSRLH 645

Query: 473 DAG-NDQPGR-----PDIVLMFFNAGHEAISFTFPRPEDAHYLLI----DSNIPDGAVSR 522
           DAG +D P       PD++++F NAGHEAI F FPR E  ++LL+    D+ IP G   R
Sbjct: 646 DAGQSDSPAEAAEATPDVLMIFVNAGHEAIDFHFPRTEGDYHLLLDTAQDTGIPTGEDVR 705

Query: 523 EACT-TASVEVAAHSVQVFANRPCREKS 549
                +A+V+V AHS+QVFANRP    S
Sbjct: 706 LVLPGSATVQVPAHSLQVFANRPLHLAS 733


>gi|300311816|ref|YP_003775908.1| malto-oligosyltrehalose
           trehalohydrolase [Herbaspirillum seropedicae SmR1]
          Length = 616

 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 75/190 (39%), Gaps = 40/190 (21%)

Query: 1   VIYEAHVRGISMMRDGVMPHERGTFAALGHPDFIAHLQKLGVTTLELMPVHAFLQENFLL 60
           V+YE H            P   G FA +     +A L +LG+T +ELMPV  F   +   
Sbjct: 119 VLYELH------------PGAMGGFAGIRQ--RLAELAELGITAIELMPVAEFPGAH--- 161

Query: 61  QRDLRNYWGYSTLGFFAPEPAYLSTGDLNELRMAVRHFHAAGIEVILDVVYNHTCSGSEL 120
                  WGY  +  FAP+ +Y   G   +L+  +   H  G+ V LDVVYNH       
Sbjct: 162 ------NWGYDGVLPFAPDASY---GTPEQLKALIDTAHGLGMMVFLDVVYNH------F 206

Query: 121 GPTLSMRGLDNASYYRLLPGEERYYINDTGCGNTVNMSHPRVIQLVLDSLRYWAEAFDID 180
           GP        + +Y      E       T  G T++   P V      +  YW + +  D
Sbjct: 207 GP--------DGNYLHAYAPEFFRQDMQTLWGATIDFRRPEVDDFFTQNALYWLQEYRFD 258

Query: 181 GFRFDLCSTL 190
           G R D    +
Sbjct: 259 GLRLDAVHAI 268


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,784,788
Number of extensions: 77217
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 2
Length of query: 549
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 459
Effective length of database: 1,193,720
Effective search space: 547917480
Effective search space used: 547917480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)