BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0030.p
         (256 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311815|ref|YP_003775907.1| 4-alpha-glucanotransferase [Her...   156   2e-39

>gi|300311815|ref|YP_003775907.1| 4-alpha-glucanotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 751

 Score =  156 bits (394), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 109/165 (66%), Gaps = 4/165 (2%)

Query: 1   MMLLRHLYAMFRMQE----RPSAELAAFRLQGGQALADHALFETLHHWLHTKDIGVASDW 56
           + LLR LYA+FR +       SA  AAF+ QGG AL  HAL+E   +WL  +      DW
Sbjct: 303 LTLLRRLYALFRTEHGADPAQSAAFAAFQSQGGPALRAHALYEAYSNWLCQQGAPGYCDW 362

Query: 57  RRWPERYHRPGSAELKRLAEEQSGEVDFHIFLQWQASRWMQAAQQSAREAGMAVGLIADL 116
           R+W      P +  +   A + +GE++FH+FLQWQA+R +  AQQ AR +GM +GLIADL
Sbjct: 363 RQWGAAAQHPDTPAMSNFAADHAGEIEFHLFLQWQATRQLAHAQQCARASGMPIGLIADL 422

Query: 117 AVGADNGGSQSWSQRSEMITGLSAGAPPDLLNTRGQNWGIGAFSP 161
           AVGADNGGSQ+WS + E+  GL+ GAPPD L   GQNWG+GAFSP
Sbjct: 423 AVGADNGGSQAWSHQGEIAAGLTVGAPPDRLAPLGQNWGLGAFSP 467


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 867,032
Number of extensions: 37032
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,226,865
Effective search space: 212247645
Effective search space used: 212247645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)