BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0028.p
         (931 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311814|ref|YP_003775906.1| malto-oligosyl trehalose syntha...   894   0.0  

>gi|300311814|ref|YP_003775906.1| malto-oligosyl trehalose synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 987

 Score =  894 bits (2311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/986 (51%), Positives = 624/986 (63%), Gaps = 74/986 (7%)

Query: 4   PASARTLIPRATLRLQFHRDFTFDDALAQIDYFAGLGISHLYASPVFTARSGSTHGYDVV 63
           P S    + RAT RLQ HRDF F  A   +DY+  LG+SHLY SP+ TAR GSTHGYDV 
Sbjct: 13  PVSHAAPLIRATARLQLHRDFNFAQAAEVVDYYQRLGVSHLYVSPILTARPGSTHGYDVA 72

Query: 64  DPTRINPELGGEDGLRRLVQALHERRMGLIVDIVPNHMALGEQNPWWRDVLLWGQHSRYA 123
           D +RINPELGGE GLR+LVQ L    MGL+VDIVPNHMA+G  NPWW+DVL WG+ S +A
Sbjct: 73  DASRINPELGGESGLRQLVQRLRAAGMGLLVDIVPNHMAVGRHNPWWQDVLRWGRESPHA 132

Query: 124 SWFDIEWQGADPALHGKVLLPVLGKPYGELLRAGEIKLELDA--GRLYVICPGNRLPLAP 181
            WFDI+W  ADPAL GKVLLP LG+PY E L AGE+ L LDA  G LYV    +R PLA 
Sbjct: 133 LWFDIDWDSADPALKGKVLLPFLGQPYAEALEAGELVLCLDAESGELYVEHYEHRFPLAA 192

Query: 182 EDYVDLLGAADSGSSRLQEAVGAFRRVLEAAVQEERRSCAVHAWRVLEQVAADPAVHAAI 241
            D+  +L  A  GS RL E + AFR+ +        ++C+  A+ +L  +A DP   A I
Sbjct: 193 PDHALVLETA--GSQRLAEVIAAFRKAMP-------QTCSA-AYGLLRDLARDPEALADI 242

Query: 242 VAGLEKFSALTPEGASALHELLERQHYRLCDWRNAGDEINWRRFFEIGDLIGMRVEQDDV 301
            A L  FSA  P G SALH+LLERQHYRL  WRNA DEINWRRFFE+ +L+GMRVE++DV
Sbjct: 243 DAALAGFSAAQPHGRSALHQLLERQHYRLACWRNAADEINWRRFFEVSELVGMRVEREDV 302

Query: 302 FEAMHALLFRLVGEGIIDGVRLDHIDGLAEPAAYVQRLRQRLEALTQGAPVYIVAEKILG 361
           FEAMHA LFRL  EG+IDG+RLDHIDGL +PAAY  RLRQRL +L  G   YIVAEKIL 
Sbjct: 303 FEAMHAELFRLYAEGLIDGLRLDHIDGLTDPAAYCLRLRQRLRSLRPGHEPYIVAEKILA 362

Query: 362 AEENLPTDWGIDGTTGYDFMDQAAAVLHDDDGVALLDAVWKEYRTDPDG----------- 410
            +E LP  W +DG+TGYDFM+Q AAVLHD DG  +LD +W++   +              
Sbjct: 363 GDEALPAAWQLDGSTGYDFMEQCAAVLHDGDGEPVLDDLWRDIVAELGSSSSQDCMQVHG 422

Query: 411 ------FDYLVHSTRRWLLERNFASEFNALTSALHALARSAVSTRDLSLMAIRRCLRELL 464
                 F  +V   RR  L RNFA+EFN LT  LH LARSAV+TRDLSLM++RRC+ ELL
Sbjct: 423 PAELCHFPSMVQQARRSFLTRNFAAEFNVLTHCLHQLARSAVTTRDLSLMSVRRCVAELL 482

Query: 465 VYFPVYRTYGIRAGCNARDAFVIRATAARVRELLAKSDQAALEAIVALLA-DPPQPGMQD 523
           V+FPVYRTY    G  A +  ++  TA      L  SD   L  +   L  D   P  Q+
Sbjct: 483 VHFPVYRTYATEEGMPALERELLARTAQLAAARLHPSDHPTLHVVEGWLGGDLMLPVGQE 542

Query: 524 ERHAQLHWRALTRFQQLTPPLTAKSTEDTAFYRYGRLLSRNEVGSEPDQLGISVENFHRH 583
            R A L  RA+ RFQQLTPPLTAKS EDTAFYRYGRLLSRNEVG+EP QL +S+ +FH+ 
Sbjct: 543 PRRA-LQLRAIARFQQLTPPLTAKSMEDTAFYRYGRLLSRNEVGAEPAQLALSIAHFHQL 601

Query: 584 VMRRQQDFPLAMLATATHDHKRGEDARMRLAVLSEIPAHWQSTLQRWRALN-----QTAR 638
             RR    P ++LAT THDHKRGEDARMRLA LSEIP  W + ++ WR LN      TA 
Sbjct: 602 AARRAAQTPASLLATGTHDHKRGEDARMRLAALSEIPEEWATVVRHWRTLNAPIVAATAG 661

Query: 639 VQMPIDAVDELMLYQTLIGAWP-------LEQSGEANLLERVSAWQEKALREAKRRSDWN 691
            +  IDA DE MLYQ+L+G WP        + S    L  RV AWQ KALREAKRRSDW 
Sbjct: 662 AEGGIDAADEYMLYQSLVGVWPDGMRAGDDDLSALEELAARVIAWQRKALREAKRRSDWI 721

Query: 692 APDPDYEGQCDGFLRRILRADADNA----FLPALRHFVQEVAAAGVLNSLGQTVLRLTVP 747
           AP   YE  C+ F R +L     +A    FL  L  FV+ +A  G +NSL QT+L+LTVP
Sbjct: 722 APQASYEAACERFTRALLCDPGLDARHHPFLTGLEEFVRRLAPLGAINSLSQTMLKLTVP 781

Query: 748 GVPDLYQGCDLWDFSLVDPDNRRPVDYALRQRLMQTGRMAPLTLEDWRSGACKQQVIRTL 807
           GVPD YQG +LWD S+VDPDNRRPVD+ +RQR +      P++L  W+SG  KQQ+I  +
Sbjct: 782 GVPDFYQGSELWDLSMVDPDNRRPVDFDMRQRRLADAMSRPVSLRQWQSGGAKQQLIHAV 841

Query: 808 LHFRSGREELFTTGEYVPLAVTGELADKLIAFAR---------RSGGLTIIILVSRHAAR 858
           L  R    +L+  G+Y+PL+  G+LA  +IAFAR           G    +++ +R AA 
Sbjct: 842 LQHRRAHAQLYAQGQYLPLSTHGKLARHVIAFARLLPAPDGAQGQGWQATVVVCTRLAAH 901

Query: 859 LIVSGHTAQTLHAATPLVPPERWGDTAVQLP------QGSPAGEWQSVLSGAEGAVRE-- 910
           L+           A PLV  E WGDT + LP      QG    +W+SVL+   G + E  
Sbjct: 902 LLAFDGARDE---ALPLVSAEVWGDTRIVLPAQLSHAQGEGLRQWRSVLTSGAGPLEECA 958

Query: 911 -------QRIVVADVLRTLPVDVLVL 929
                    + V+++L +LPV++L L
Sbjct: 959 MPDGERGGSMTVSEILGSLPVELLEL 984


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 3,200,016
Number of extensions: 148279
Number of successful extensions: 465
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 1
Length of query: 931
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 837
Effective length of database: 1,174,780
Effective search space: 983290860
Effective search space used: 983290860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)