BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0018.p
         (107 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469...   155   7e-40
gi|300313117|ref|YP_003777209.1| hypothetical protein Hsero_3823...    57   3e-10

>gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469
           [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score =  155 bits (392), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 77/106 (72%), Positives = 92/106 (86%), Gaps = 4/106 (3%)

Query: 1   LLARIRPDEDLTIAIEEVCRTHGIKNAVVRGSVGSIIGAEFDDGRVIEDRATEILVRSGH 60
           +LARIRPD+DLT+A+E  C  HG+ NA+VRGSVGSIIGAEFDDGRV+EDRATEIL+R+G 
Sbjct: 187 VLARIRPDQDLTMAVEAACAEHGMANAIVRGSVGSIIGAEFDDGRVLEDRATEILIRAGE 246

Query: 61  VSRGHEGVRAQLDIALIDPRGHVCEGVLARGRNPVLICFELVLEEL 106
           V +G    RA+L+I LI+P+G VCEGVLARG NPVLICFELVL+EL
Sbjct: 247 VRQG----RARLEIGLINPQGQVCEGVLARGCNPVLICFELVLQEL 288


>gi|300313117|ref|YP_003777209.1| hypothetical protein Hsero_3823
           [Herbaspirillum seropedicae SmR1]
          Length = 152

 Score = 57.0 bits (136), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 8/114 (7%)

Query: 1   LLARIRPDEDLTIAIEEVCRTHGIKNAVVRGSVGSIIGAEFDDGRV-------IEDRATE 53
           ++AR++P++DLT ++E +CR HG+  A+VRG++GS+I A              +     E
Sbjct: 28  VMARLKPNQDLTESVEALCRQHGMDKAIVRGAIGSLIDAHLQYATPTGLREMEVNGPGVE 87

Query: 54  ILVRSGHVSRGHEGVRAQ-LDIALIDPRGHVCEGVLARGRNPVLICFELVLEEL 106
           IL   G +        A  L   + D  G +  G   RG N   I  E+ L+E 
Sbjct: 88  ILNVFGEIGFADGPASAHPLQGVVADTEGRIFAGRFVRGANLSFITIEITLQEW 141


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.144    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 346,092
Number of extensions: 13327
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 35
Effective length of database: 1,278,950
Effective search space: 44763250
Effective search space used: 44763250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)