BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0016.p
         (732 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311789|ref|YP_003775881.1| chemotaxis histidine kinase [He...   884   0.0  
gi|300312939|ref|YP_003777031.1| transmembrane nitrate/nitrite s...    57   7e-09

>gi|300311789|ref|YP_003775881.1| chemotaxis histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 808

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/570 (81%), Positives = 505/570 (88%), Gaps = 3/570 (0%)

Query: 1   MTIRLRITLLVILTFIAISAIGGYAVFQSRSSAVEVKSVTEGVVPSVLASSDLVGQLKDV 60
           MTIR+RITLLVILTFIAI+ IGGYA++QSRSSAVEV+SVTEGV+PSVLAS+DL+GQLKDV
Sbjct: 1   MTIRMRITLLVILTFIAIAGIGGYAMYQSRSSAVEVRSVTEGVMPSVLASADLMGQLKDV 60

Query: 61  QLAAMVMVAETDAQLVVQENEKLAAKKATLEKALEFQAGQAASQAQKGLIEQARESLDNY 120
           QLAAMVMV E D QLV QENEKLA KKA LEKAL  QA QA   AQ+GLIEQA+ESLDNY
Sbjct: 61  QLAAMVMVTENDNQLVAQENEKLAEKKAVLEKALAAQAQQAEGVAQRGLIEQAKESLDNY 120

Query: 121 FGAIDSTAKFKLAGKDALAQASFFGNVVQYQAELEGVVDTLRIEKNRSKDSAIAALNQNL 180
           FGAID+TAKFKLAGK+ +AQA FFG V+QYQ ELEG+V+TLRIEKNR KD+AIA+LN  L
Sbjct: 121 FGAIDTTAKFKLAGKNEIAQAQFFGGVMQYQTELEGIVNTLRIEKNRFKDNAIASLNGKL 180

Query: 181 ASTTTTISGVTAVAVIALALIGFLLYRQITGPISRMQTMMTEIAASQDFTRRLPVDRMDE 240
           A TTTTIS VT +AV+ L  IGFLLYRQITGPISRM  MM EIA SQDFTRRLPV RMDE
Sbjct: 181 AQTTTTISIVTVMAVLLLGGIGFLLYRQITGPISRMAAMMGEIATSQDFTRRLPVQRMDE 240

Query: 241 VGHSIVAFNGMVEKIEEASALVKQKTADMQAMLQNIPQGILTVVDGNTVHPEYSAFLETV 300
           VGHSIVAFNGMVEKIEEASA V+QKTADMQAMLQNIPQGILT+V+GN +HPEYSAFLETV
Sbjct: 241 VGHSIVAFNGMVEKIEEASAQVRQKTADMQAMLQNIPQGILTIVEGNRIHPEYSAFLETV 300

Query: 301 FETTDIAGRDLMELVFAGTSLGADTLSQIEAIGGACIGEDIMNFEFNEHLMVGEVEKKMA 360
           FETTDIAGRD+MELVFA T LGADTLSQIEAIGGACIGED+MNFEFN HLMVGE+EK MA
Sbjct: 301 FETTDIAGRDVMELVFADTQLGADTLSQIEAIGGACIGEDVMNFEFNAHLMVGEIEKTMA 360

Query: 361 DGRVKILDLSWSPITDDADTVIRLMLCVRDVTELRKLAAEANEQKHELEMIGEILAVAAP 420
           DG  KILDLSWSPITD+ADTVIRLMLCVRDVTELR+LAAEANEQK ELEMIGEILAV   
Sbjct: 361 DGSKKILDLSWSPITDEADTVIRLMLCVRDVTELRQLAAEANEQKRELEMIGEILAVTPA 420

Query: 421 KFEDFIATSRRFLDENEQIVHQNPEATAFAIAKLFRNMHTIKGNGRTYGLLHLSNVVHDV 480
           KF +FI+++RRFLDENEQIVHQNPEATAFAIAKLFRNMHTIKGNGRTYGLLHL+NVVH  
Sbjct: 421 KFAEFISSARRFLDENEQIVHQNPEATAFAIAKLFRNMHTIKGNGRTYGLLHLANVVHHT 480

Query: 481 EQHYDDLRHPETGAVWEQERLLQDLARVRVAVDRYARINEVTLGR--KAAPEQA-AAVER 537
           EQHYDDLRHP +GAVW QE LL+ LA+VR  +DRYARIN+VTLGR   AA EQ      R
Sbjct: 481 EQHYDDLRHPASGAVWRQEELLRQLAQVREIIDRYARINDVTLGRGVAAAGEQTLPGYAR 540

Query: 538 HILTIDRKHIQESLHRLETVNTANLHELRA 567
           H++TIDRKHI++SL RLE VNTANLHEL A
Sbjct: 541 HVITIDRKHIEQSLERLENVNTANLHELVA 570


>gi|300312939|ref|YP_003777031.1| transmembrane nitrate/nitrite
           sensor histidine kinase transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 650

 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%)

Query: 147 VVQYQAELEGVVDTLRIEKNRSKDSAIAALNQNLASTTTTISGVTAVAVIALAL-----I 201
           +  Y  EL   VD + +         +A +  +LA  TT +  +   A+I LAL     +
Sbjct: 151 ITLYLQELPDFVDDINL--------LVALVEADLAGKTTWLR-LCQTALIFLALAASIAV 201

Query: 202 GFLLYRQITGPISRMQTMMTEIAASQDFTRRLPVDRMDEVGHSIVAFNGMVEKIEEASAL 261
            +LLY  I GP+ RMQ  +  ++ + D   RLP++  DE G    AFN M + +      
Sbjct: 202 LYLLYLWIVGPVRRMQAGIARMSMN-DLDVRLPIESADEFGQLACAFNQMADHVRSVHRT 260

Query: 262 VKQKTADMQAMLQ 274
           ++Q+ A+  A LQ
Sbjct: 261 LEQRVAEKTAQLQ 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,938,130
Number of extensions: 72241
Number of successful extensions: 305
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 7
Length of query: 732
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 640
Effective length of database: 1,184,250
Effective search space: 757920000
Effective search space used: 757920000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)