BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0013.p
         (183 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311787|ref|YP_003775879.1| hypothetical protein Hsero_2472...   252   1e-68

>gi|300311787|ref|YP_003775879.1| hypothetical protein Hsero_2472
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  252 bits (643), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 117/185 (63%), Positives = 145/185 (78%), Gaps = 3/185 (1%)

Query: 2   LTQSAKDGFDTLLTQSLKSGMAPSGARVDISVLADDVGIPEKKMVVLTVSSYLFRLMAMF 61
           ++ +A+DG D LL Q+L+S + PSG +    VL D   + EKKMVVLT+SSYLFR++ MF
Sbjct: 25  VSAAARDGLDVLLQQALRSSLVPSGCQAAFEVLDDISHVQEKKMVVLTISSYLFRMVVMF 84

Query: 62  YFTPDAATRAHFARINNIDEAEMSEQTFMDAIAESGNLCCGILNRDLGNFFPHIGMSTPN 121
           +FT DAATRAHFA ++N+  AEMSEQ  +DAIAE GNLCCGI NR+LG +FPH+GMSTPN
Sbjct: 85  HFTADAATRAHFASLHNVAAAEMSEQGLLDAIAECGNLCCGIFNRELGRYFPHLGMSTPN 144

Query: 122 VIDSNCAAYLQTLNCQHVRHFAVD---MDDAPRFHVTLSVSAYADIDFAVSAEELGSDTG 178
           VID  CAAYLQ LNC H+RHFA+D   + ++PRFHV+L VSAYA +DFAV+AEE    TG
Sbjct: 145 VIDRQCAAYLQKLNCAHIRHFAIDLAELPESPRFHVSLCVSAYAPLDFAVAAEEQVDTTG 204

Query: 179 ELELF 183
           ELELF
Sbjct: 205 ELELF 209


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 525,548
Number of extensions: 19277
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,241,070
Effective search space: 127830210
Effective search space used: 127830210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)