BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0012.p (122 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311785|ref|YP_003775877.1| chemotaxis response regulator C... 230 3e-62 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 96 7e-22 gi|300309955|ref|YP_003774047.1| two-component system sensor his... 95 2e-21 gi|300311034|ref|YP_003775126.1| chemotaxis response regulator p... 78 2e-16 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 72 1e-14 >gi|300311785|ref|YP_003775877.1| chemotaxis response regulator CheY [Herbaspirillum seropedicae SmR1] Length = 122 Score = 230 bits (586), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 116/122 (95%), Positives = 120/122 (98%) Query: 1 MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLVKLKGDPSIRLVVSDVNMPNMD 60 MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGL KLKGDP+I+LVVSDVNMPNMD Sbjct: 1 MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMD 60 Query: 61 GLTMAEKIRSELGNAAVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGDAVLATFKKLV 120 GLTMAEKIRSELGNA+VNIIMLTTENSPIMKERGKAAGIKGWIVKPFKG+AVL TFKKLV Sbjct: 61 GLTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120 Query: 121 GA 122 GA Sbjct: 121 GA 122 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 96.3 bits (238), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 56/118 (47%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Query: 4 ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLVKLKGDPSIRLVVSDVNMPNMDGLT 63 IL VDDS ++R V LK G +V AVDG D L K K + LV++D NMP MDGLT Sbjct: 5 ILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKSQ-TFDLVLTDQNMPRMDGLT 63 Query: 64 MAEKIRSELGNAAVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGDAVLATFKKLVG 121 + +R A V I+MLTTE S MK +GKAAG GW+VKPF + +K++G Sbjct: 64 LIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVIG 121 >gi|300309955|ref|YP_003774047.1| two-component system sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 122 Score = 94.7 bits (234), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 4 ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLVKLKGDPSIRLVVSDVNMPNMDGLT 63 IL+VDDS ++R + LK G V A DG+ L L G LV+SD+NMP++DGL+ Sbjct: 5 ILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGR-KFNLVISDLNMPHLDGLS 63 Query: 64 MAEKIRSELGNAAVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGDAVLATFKKLV 120 +++ +IMLTTE+S K+ GKAAGI+ W+ KPF+ +L KL+ Sbjct: 64 FVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 >gi|300311034|ref|YP_003775126.1| chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] Length = 126 Score = 77.8 bits (190), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 67/118 (56%) Query: 3 QILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLVKLKGDPSIRLVVSDVNMPNMDGL 62 I +VDDS+T+ V L+ G V A DG L K++ L+++D+NMPNMDGL Sbjct: 6 SIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMDGL 65 Query: 63 TMAEKIRSELGNAAVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGDAVLATFKKLV 120 + +R+ G + I+ LTTE+ ++ GK AG GW+VKP G +L ++++ Sbjct: 66 ELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 72.0 bits (175), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 2/106 (1%) Query: 3 QILVVDDSSTVRAEVGDFLKKNGL-DVALAVDGRDGLVKLKGDPSIRLVVSDVNMPNMDG 61 + LVVDD ST+R V + LK+ G +V A DG L KL+ D VVSD NMPNMDG Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSD-QFDFVVSDWNMPNMDG 65 Query: 62 LTMAEKIRSELGNAAVNIIMLTTENSPIMKERGKAAGIKGWIVKPF 107 LTM ++IR + + + ++M+T E AG G++VKPF Sbjct: 66 LTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPF 111 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 352,674 Number of extensions: 12683 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 14 Length of query: 122 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 48 Effective length of database: 1,269,480 Effective search space: 60935040 Effective search space used: 60935040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 125 (52.8 bits)