BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0010.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon...   247   6e-67
gi|300312820|ref|YP_003776912.1| AraC family transcription regul...    68   5e-13

>gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 332

 Score =  247 bits (630), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 128/209 (61%), Positives = 147/209 (70%), Gaps = 4/209 (1%)

Query: 1   LRTVVAHDVDEHAHNLTNWEQRYDQITHGRFCGELNEWQAHGLQIFRERSSRAVLQSCCV 60
           LRT VA DVDEHAHNLT+WEQRYDQIT G F G L EWQ+ GLQIFRE SSRAV QSC V
Sbjct: 20  LRTTVARDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSDGLQIFREASSRAVRQSCQV 79

Query: 61  WPDAFWFGIEPQARGMRINGRNVGAGMIMTQPGHREFELMTPDDHEILGIVIQRNTLLAA 120
           WPDA+WFGIE +  GMRINGR VG  ++MT+PG  EFEL+TPD HEI GIV+QR+ L A+
Sbjct: 80  WPDAYWFGIEARTTGMRINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQAS 139

Query: 121 ADRLGCRIEWSRLAAAELLHVGQDALLACAQHIQTLL----DAQAPQGAQAMQQDHVITT 176
           A RLGC+ +W RL  AELL V    L  C Q I  LL     A     A  ++Q+ V+  
Sbjct: 140 AARLGCQPDWQRLGQAELLKVDHGGLEDCRQQIAALLAMAGQASGAHAALQLRQEAVLVA 199

Query: 177 LLAMLDAGEVENDACTSLLRRRRAVNXHR 205
           LLAMLD GE+E +A  S LRRRR VN  R
Sbjct: 200 LLAMLDEGEIEAEAGASFLRRRRIVNDAR 228


>gi|300312820|ref|YP_003776912.1| AraC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 331

 Score = 68.2 bits (165), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 8   DVDEHAHNLTNWEQRYDQITHGRFCGELNEWQAHGLQIFRERSSRAVLQSCCVWPDAFWF 67
           DVDE A  LT WEQ Y Q+  GRF G L   Q       RER++ A+ +     P     
Sbjct: 15  DVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTALHERMVPPPGQMVI 74

Query: 68  GI-EPQARGMRINGRNVGAGMIMTQPGHREFELMTPDDHEILGIVIQRNTLLA 119
           GI     RG  +NGR +G   ++   G R   + T    E++GI +QR+  L+
Sbjct: 75  GICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISMQRDLFLS 127


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 716,488
Number of extensions: 25857
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)