BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0007.p
         (402 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311833|ref|YP_003775925.1| hypothetical protein Hsero_2518...   690   0.0  

>gi|300311833|ref|YP_003775925.1| hypothetical protein Hsero_2518
           [Herbaspirillum seropedicae SmR1]
          Length = 440

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/393 (81%), Positives = 354/393 (90%)

Query: 8   GKAPVGLDRAKWAPRNREMVEQMIAAYGNTSRGYKSGKKPYAVFDWDNTSIMNDCEEALL 67
            +A V LDRAKWA RN EMV QMIA +G  + GY+S K+PYAVFDWDNTSIMNDCEEALL
Sbjct: 45  ARAEVALDRAKWAARNHEMVAQMIAEHGKLAAGYQSSKRPYAVFDWDNTSIMNDCEEALL 104

Query: 68  MHQINTLSFKLTPAEFSAIIRQNVPPGPFTADFKNAAGKVVDLDSICADLDADYAFLHAN 127
           MHQINTLSFKLTPAEFSAI RQNVPPGPF+ DFKNAAG+VVDL++ICADLDADYAFL+AN
Sbjct: 105 MHQINTLSFKLTPAEFSAITRQNVPPGPFSKDFKNAAGEVVDLEAICADLDADYAFLYAN 164

Query: 128 YKGFAGTRSLEDISTTSEFLDFRAKLYYLYEAVNDTHGVNVGYPWVIYFFANMTVAEVSA 187
           YKG AG++SLE++S T EF DFRAKLYYLYEAVNDTHGV VGYPWVIYFFANM+VAEVSA
Sbjct: 165 YKGMAGSKSLEEVSATPEFQDFRAKLYYLYEAVNDTHGVAVGYPWVIYFFANMSVAEVSA 224

Query: 188 LAEASNDAALGAALAKVKYTSPADRPGKAGVVSVGHFHGIRLCTEIGGMMDTFRDHGIDI 247
           LAEASNDAALGAAL KVKYTSPA RPG+AGVVSV HFHGIRLCTEI  +MD  R +GID+
Sbjct: 225 LAEASNDAALGAALTKVKYTSPAQRPGRAGVVSVSHFHGIRLCTEIATLMDALRRNGIDV 284

Query: 248 YVCTASLEDVVAVFATNPKYGYNVARENIIGLRLERDGSIYKNAYLKNWPLTWGPGKTVA 307
           YVCTASLE+VVAVFAT+PKYGY+V+R+NIIGLRLER+G + +NAYLK+WPLTWGPGKTVA
Sbjct: 285 YVCTASLEEVVAVFATHPKYGYHVSRDNIIGLRLERNGQVLRNAYLKDWPLTWGPGKTVA 344

Query: 308 IKSELVAAKGYGPIFVAGDSDGDYDMLRDFADTRYGLIVNRMKNGKIGELSKLAATQITA 367
           I+  LVA KGYGP+FVAGDSDGDYDMLRDF +TRYG IVNRMKNGKIGELSKLAA QI A
Sbjct: 345 IRQVLVAQKGYGPLFVAGDSDGDYDMLRDFPETRYGFIVNRMKNGKIGELSKLAAEQINA 404

Query: 368 GQPRFLLQGRQESTGNWLPVETSIKYGKTTPLL 400
           G+PRFLLQGRQESTGNWLP E SIKYGKT P L
Sbjct: 405 GRPRFLLQGRQESTGNWLPAEASIKYGKTAPQL 437


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,246,577
Number of extensions: 49377
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,207,925
Effective search space: 380496375
Effective search space used: 380496375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)