BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0005.p
         (352 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311832|ref|YP_003775924.1| ethanolamine ammonia-lyase larg...   356   2e-99

>gi|300311832|ref|YP_003775924.1| ethanolamine ammonia-lyase large
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 468

 Score =  356 bits (913), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 171/196 (87%), Positives = 181/196 (92%)

Query: 1   VAQMALAELPLRIFLNETLAPYETDEVTRLIIDEHDAAAFATISHLTVGDFRNWLLGDDV 60
           +AQMALA LPL+ FL E L PYE DEVTRLI+D HD AAFATI+HLTVGDFRNWLL DD 
Sbjct: 49  IAQMALAALPLKTFLEEPLIPYEEDEVTRLILDSHDRAAFATIAHLTVGDFRNWLLADDT 108

Query: 61  DSATLSAVAPGITPEMAAAVSKIMRNQDLILVAKKCRVVTAFRNTIGLAGRLSTRLQPNH 120
           DSA L+AVAPGITPEMAAAVSKIMRNQDLILVAKKCRVVTAFRNTIGL GRLSTRLQPNH
Sbjct: 109 DSAVLAAVAPGITPEMAAAVSKIMRNQDLILVAKKCRVVTAFRNTIGLPGRLSTRLQPNH 168

Query: 121 PTDDATGIAASLLDGLVYGSGDAVFGINPATDNVPQVVNLVTMMADIIARYEIPTQSCVL 180
           PTDDA+GIAAS+LDGL+YG+GDAV GINPATDNVPQVV LV MMAD+IARYEIPTQSCVL
Sbjct: 169 PTDDASGIAASMLDGLLYGNGDAVIGINPATDNVPQVVKLVGMMADVIARYEIPTQSCVL 228

Query: 181 THVTNTIAAIERGAPV 196
           THVTNTIAAIERGAPV
Sbjct: 229 THVTNTIAAIERGAPV 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.128    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 887,302
Number of extensions: 31140
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,212,660
Effective search space: 322567560
Effective search space used: 322567560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)