BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0003.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311831|ref|YP_003775923.1| ethanolamine ammonia-lyase smal...   327   7e-91

>gi|300311831|ref|YP_003775923.1| ethanolamine ammonia-lyase small
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  327 bits (838), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 179/293 (61%), Positives = 211/293 (72%), Gaps = 22/293 (7%)

Query: 3   DNKSP----VVDNPWQALRQFTAARIALGRAGVSLPTVPQLAFQLAHAQARDAVHLALDT 58
           +N SP    V  NPW+ALR+FTAARIALGR+GVSLPT PQLAFQLAHAQARDAVHL LD 
Sbjct: 14  ENASPGAETVTANPWEALRRFTAARIALGRSGVSLPTQPQLAFQLAHAQARDAVHLPLDV 73

Query: 59  EALRAQLLQAGIPGAEECQVLDSAATDRLTYLQRPDLGRRLSAAARATLNAAADYPETKQ 118
            AL+AQL + G+  A+E   + SAA DRL YLQRPD GR+LS  +R  L           
Sbjct: 74  AALKAQLQEQGVCAAQEVLDVQSAAADRLVYLQRPDFGRKLSEPSRQQL----------L 123

Query: 119 EGDGDTPQERIHDLAFVIADGLSSLAIARNAVPFLQAVQQRIAPRCWAQAPLTIVRQGRV 178
           E  G  PQ R +D+  VIADGLS+LAI RNA PFL  + +RIAP  W+ AP  IV+QGRV
Sbjct: 124 ELFGTQPQRR-YDVGLVIADGLSALAIVRNAAPFLAELMKRIAPEGWSMAPPVIVQQGRV 182

Query: 179 AIGDDIGSLLRTRLVVVMIGERPGLSSPDSMGLYLSWMPRVGMTDAERNCISNVRPEGMR 238
           A+ D+IG LL  +LVV++IGERPGLSSPDSMGLYL+WMP  G+TDA RNCISNVRPEG+ 
Sbjct: 183 AVADEIGELLGVKLVVILIGERPGLSSPDSMGLYLTWMPARGLTDASRNCISNVRPEGLP 242

Query: 239 YDEAAGKLDYLLTEAHRRQLTGVGLKDESAGNVGCEGGAQTLAARGTNFLLVD 291
           Y EAA KL YL+ +AH+R L+GV LKDE+A     EG  + L  R  NFLL D
Sbjct: 243 YPEAAYKLHYLMAQAHQRSLSGVALKDETAS----EG--EALDVR-RNFLLGD 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 981,972
Number of extensions: 41207
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)