BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0294.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310013|ref|YP_003774105.1| flavin reductase domain, FMN-bi...    92   1e-20

>gi|300310013|ref|YP_003774105.1| flavin reductase domain,
           FMN-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score = 92.4 bits (228), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 81/136 (59%), Gaps = 4/136 (2%)

Query: 1   VITSHI-DGEQIGFTCQSFHSVSMSPPLVSFSVMSGSASYPRIRQAGRFAVNILSDEQVE 59
           VIT+ + DG  +G T  SF+SVS+ PPLV +S+ S + S P       + +NILS +Q  
Sbjct: 31  VITTRLADGTLLGLTASSFNSVSLDPPLVLWSLGSKANSMPVFSGNSHYVINILSADQAH 90

Query: 60  ISQQFARRGTDKWHGIEWQESPLGNPIIVGSLHWLDCEIYAEHAAGDHLIVIGEVKALDL 119
           ++QQFA +  +++ G+ +  S  G PI+ G+  W +C   +++  GDH+I +GEV+  + 
Sbjct: 91  LAQQFASKMENRFEGVAYTLSRTGQPILEGASAWFECHNRSQYPEGDHVIFVGEVEHCEA 150

Query: 120 QEAAATQPLLYFKGQY 135
              AA   L++  G++
Sbjct: 151 DPQAA---LVFHGGRF 163


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 457,185
Number of extensions: 18030
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)