BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0293.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309895|ref|YP_003773987.1| methionine synthase II protein ...   573   e-165

>gi|300309895|ref|YP_003773987.1| methionine synthase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score =  573 bits (1478), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 272/305 (89%), Positives = 288/305 (94%)

Query: 1   LSEGKQDALRLSLQEQQHAGIDIVSDGEQTRQHFVTTFIEHLDGVDFENRKTVRIRDRYD 60
           L + K+DALRLSLQEQQHAGIDIVSDGEQTRQHFVTTFIEHLDGVDF  R+TVRIR+RYD
Sbjct: 36  LEDAKRDALRLSLQEQQHAGIDIVSDGEQTRQHFVTTFIEHLDGVDFAKRETVRIRNRYD 95

Query: 61  ASVPTVVGAVARRKPVFVEDARFLRQQTTQPIKWALPGPMTMIDTLYDDHYKSREKLAWE 120
           ASVPTVVGAV+R KPVFV+DARFLR QT QPIKWALPGPMTMIDTLYD HYKSREKLAWE
Sbjct: 96  ASVPTVVGAVSRPKPVFVDDARFLRSQTDQPIKWALPGPMTMIDTLYDSHYKSREKLAWE 155

Query: 121 FAKILNQEARELEAAGVDIIQFDEPAFNVFFDEVNEWGVATLERAIEGLKCETAVHICYG 180
           FA +LNQEARELEAAGVDIIQFDEPAFNVFFDEVN+WGVATLERAIEGLKCETAVHICYG
Sbjct: 156 FATLLNQEARELEAAGVDIIQFDEPAFNVFFDEVNDWGVATLERAIEGLKCETAVHICYG 215

Query: 181 YGIKANTDWKKTLGSEWRQYEEAFPKLQKASIDIVSLECHNSHVPMDLIELIRGKKVMVG 240
           YGIKANTDWKKTLGSEWRQYEE FP+LQ +SIDIVSLECHN+ VPMDLIELIRGKKVMVG
Sbjct: 216 YGIKANTDWKKTLGSEWRQYEETFPRLQASSIDIVSLECHNARVPMDLIELIRGKKVMVG 275

Query: 241 AIDVANHTIETPEEVANTLRKALQFVDADKLYPCTNCGMAPLPRGVARGKLNALSAGAEI 300
           AIDVANH +E+ EEVA TLR+ALQFV+ADKLYPCTNCGMAPLPR VARGKL ALSAGAEI
Sbjct: 276 AIDVANHGVESAEEVAATLRRALQFVEADKLYPCTNCGMAPLPRDVARGKLAALSAGAEI 335

Query: 301 IRREL 305
           +RREL
Sbjct: 336 VRREL 340


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 940,408
Number of extensions: 38032
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)