BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0283.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313647|ref|YP_003777739.1| F0F1-type ATP synthase subunit ...   523   e-150

>gi|300313647|ref|YP_003777739.1| F0F1-type ATP synthase subunit
           gamma [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score =  523 bits (1348), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/294 (86%), Positives = 271/294 (92%), Gaps = 5/294 (1%)

Query: 1   MATGKEIRSKIKSVENTKKITKAMEMVAASKMRKAQDRMRAARPYSEKIRNIASNLSQAN 60
           MATGKEIR KIKSVENTKKITKAMEMVAASKMRKAQDRM AARPYS+KIRNIA+NLSQAN
Sbjct: 1   MATGKEIRGKIKSVENTKKITKAMEMVAASKMRKAQDRMHAARPYSDKIRNIAANLSQAN 60

Query: 61  PEYTHPFMVKQDNSKNVGFIVVTTDKGLCGGMNTNSLRLLTAKLRELEGQGNKVQAVAIG 120
           PEY HPFMV+QD +K VGFIVVTTDKGLCGGMNTNSLRLLT K RELEG+G  ++ VAIG
Sbjct: 61  PEYVHPFMVQQDTAKRVGFIVVTTDKGLCGGMNTNSLRLLTNKFRELEGEGKAIETVAIG 120

Query: 121 NKGLGFLNRIGATVVAHAVQMGDTPHLDKLIGPVKVLLDAYQEGRLDAVYLVYTKFINTM 180
           NKGLGFLNRIGA V A+  Q+GDTPHL+KLIGPVKVLLDAYQEG+LDAVYLVYTKFINTM
Sbjct: 121 NKGLGFLNRIGARVAANVTQLGDTPHLEKLIGPVKVLLDAYQEGKLDAVYLVYTKFINTM 180

Query: 181 KQEPMLQQLLPLSVDRLEADSKAGDAGSHSWDYIYEPDVQSVIDELLVRYVEALIYQAVA 240
           KQE  LQQLLPL+ D+L+AD      G+HSWDYIYEPDVQSV+DELLVRYVEALIYQAVA
Sbjct: 181 KQEATLQQLLPLTSDKLKADE-----GAHSWDYIYEPDVQSVVDELLVRYVEALIYQAVA 235

Query: 241 ENMASEQSARMVAMKSASDNAGNVIGELKLVYNKTRQAAITKELSEIVAGAAAV 294
           ENMASEQSARMVAMK+ASDNAG+VIGELKLVYNKTRQAAITKELSEIVAGAAAV
Sbjct: 236 ENMASEQSARMVAMKAASDNAGSVIGELKLVYNKTRQAAITKELSEIVAGAAAV 289


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 777,208
Number of extensions: 29561
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)