BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0279.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359...   364   e-102
gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790...   122   4e-29

>gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  364 bits (935), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/264 (64%), Positives = 202/264 (76%)

Query: 3   IREQFRATKRQEIKDENAGVKPLSSGDKAADKLQVQALAAQIAEQQAMLFAQHERKVLVV 62
           I  QF    +  +K+  A  KPLSSGDK  D+  VQ L+  I  QQ ML+A H+ KVLVV
Sbjct: 5   IGPQFIVHPKFVLKETEASTKPLSSGDKEKDRANVQRLSGLIGVQQQMLYAGHKHKVLVV 64

Query: 63  LQGMDTSGKDGTVSGVFGGVNPQGLRIVSYKAPSQLELQHDYLWRIHQQVPAKGELIIFN 122
           LQGMDTSGKDGTV+ VF  VNPQG+RI ++K P+ +EL HDYLWR+H QVP  GE+ +FN
Sbjct: 65  LQGMDTSGKDGTVNDVFAAVNPQGIRISNFKGPTAIELAHDYLWRVHAQVPVAGEIAVFN 124

Query: 123 RSHYEDVLITRVHNWIDAAECKRRYAQINDFERLLSETGTVVLKFFLHISKDQQRARLQE 182
           RSHYEDVLITRVH+WID  EC+RRY QINDFER+L ETGTVVLKFFLHISK +Q++RLQ 
Sbjct: 125 RSHYEDVLITRVHDWIDDKECQRRYRQINDFERMLWETGTVVLKFFLHISKAEQKSRLQS 184

Query: 183 RVDDPAKHWKFELQDLEERKSWDDYQKVYSQAIQATDADHAPWYVIPSDSKTHRNLAIAG 242
           R+DDP KHWKF+ QDL ERK WD YQ  Y + ++AT   HAPWYV+P+DSKTHRNL +A 
Sbjct: 185 RIDDPNKHWKFDPQDLAERKFWDAYQTRYQEVLRATSTLHAPWYVVPADSKTHRNLVVAN 244

Query: 243 VVLETLQAMKLAFPPAKKELAGLK 266
           VVLETLQ +KL FP  K EL  LK
Sbjct: 245 VVLETLQKLKLKFPDPKPELKNLK 268


>gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  122 bits (305), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 104/201 (51%)

Query: 58  KVLVVLQGMDTSGKDGTVSGVFGGVNPQGLRIVSYKAPSQLELQHDYLWRIHQQVPAKGE 117
           KV++V +G D +GK G +  +   +NP+  R+ +  AP+  E    Y  R    +PA GE
Sbjct: 78  KVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRERTQWYFQRYVSHLPAAGE 137

Query: 118 LIIFNRSHYEDVLITRVHNWIDAAECKRRYAQINDFERLLSETGTVVLKFFLHISKDQQR 177
           +++F+RS Y    + RV  +    + +  +  + +FER+L+  G  V+K++  I+ ++Q 
Sbjct: 138 IVLFDRSWYNRAGVERVMGFCSDEQYEEFFRSVPEFERMLTRAGIQVIKYWFSITDEEQH 197

Query: 178 ARLQERVDDPAKHWKFELQDLEERKSWDDYQKVYSQAIQATDADHAPWYVIPSDSKTHRN 237
            R   R+ DP K WK    DLE R+ W++Y K     ++ T    APW+V+ +  K    
Sbjct: 198 LRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEVMLERTHIPEAPWWVVQAVDKKKAR 257

Query: 238 LAIAGVVLETLQAMKLAFPPA 258
           L     +L+ +   ++  PP 
Sbjct: 258 LNCIHHLLQQMPYAEVPHPPV 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 776,532
Number of extensions: 29812
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)