BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0267.p
         (228 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310022|ref|YP_003774114.1| glutathione S-transferase [Herb...    64   9e-12

>gi|300310022|ref|YP_003774114.1| glutathione S-transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score = 63.9 bits (154), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 20/175 (11%)

Query: 10  PNPARIRIVLAQKNLDSQVTFESVDLIGAEHKQAAFLSKNPSGVLPLLELDDGTLISEST 69
           P   ++R+V+A+K +D +   E V       +Q+     NP G +P L +DDG  + +S 
Sbjct: 11  PFVRKVRVVMAEKKIDYEFILEDVWSASTTIQQS-----NPLGKVPCLLMDDGGAMFDSR 65

Query: 70  AITEYLDNLDGNPVLTGRTPKEKAIIHMMQRRAESGLIDAVGIYFHHAT--PGLGDDLQK 127
            I EYLD L     L     +E+A I   +  A+ G++DA  +     T  P       K
Sbjct: 66  VIVEYLDTLTPVGKLLPPNGRERAEIKCWEALAD-GMLDAAVLVRLEKTLRP------TK 118

Query: 128 YKSPEWAHRKEWGERERAKALQGMVYFDGILRNNSYVAGEQFSMADITVFAGLAF 182
            +SPEW  R +W + E   +L+ M   DG L    +  G  +S+AD+ V   L +
Sbjct: 119 QQSPEWIKR-QWSKVE--ASLKAMA--DG-LGEKPFCVGNHYSLADVAVCCALGW 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 706,630
Number of extensions: 27969
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,231,600
Effective search space: 179813600
Effective search space used: 179813600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)