BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0260.p (237 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 194 4e-51 gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC t... 179 1e-46 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 179 2e-46 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 178 3e-46 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 177 5e-46 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 194 bits (494), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 98/218 (44%), Positives = 147/218 (67%), Gaps = 2/218 (0%) Query: 1 MIALENAHVRYGQATVLSEVSITASQDEIIAIIGRNGAGKSTTLKTLIGLLPLHHGKRAY 60 ++ +E+ H YG++ +L VS+ E++ ++GRNGAGK+TTLK+++G++P G+ + Sbjct: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLF 61 Query: 61 FGRDISRLPVEQISRLGVALVPDSRRIFPNLSVMENLRMGGLGHAPGYWSIPRVLEIFPR 120 G+ IS LP +I+ GV LVP+ R IF L+V ENL M + W + + IFPR Sbjct: 62 EGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESA--WGLEEIYAIFPR 119 Query: 121 LQERIGFGGDQLSGGEQQMLAIARALLGNPKILLLDEPTEGLAPLIVNNLIDIFALVHRQ 180 L+ER GG QLSGGEQQMLAIARAL+ +P++L+LDEP EGLAP+IV+ ++ + Sbjct: 120 LKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKAT 179 Query: 181 GTGIVLVEQNLKVPMRLAQRQYVLDHGSVAWSGTSAEL 218 G I+LVEQNL+V +LA R Y+++ G + + G++AE Sbjct: 180 GMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEF 217 >gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 179 bits (455), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 99/232 (42%), Positives = 146/232 (62%), Gaps = 4/232 (1%) Query: 1 MIALENAHVRYGQATVLSEVSITASQDEIIAIIGRNGAGKSTTLKTLIGLLPLHHGKRAY 60 ++AL+ YGQ+ VL +VS T + E +A++GRNG GK++ L TL+GL LH G + Sbjct: 4 LLALDRVSAGYGQSIVLEDVSFTMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSIRW 63 Query: 61 FGRDISRLPVEQISRLGVALVPDSRRIFPNLSVMENLRMGGLGHAPGYWSIPRVLEIFPR 120 G DI+R+ + + G+ VP R +FP+LSV E+L + G G W + ++ +IFPR Sbjct: 64 RGGDIARVATHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERG---GKWDLQKIYQIFPR 120 Query: 121 LQERIGFGGDQLSGGEQQMLAIARALLGNPKILLLDEPTEGLAPLIVNNLIDIF-ALVHR 179 L ER G+QLSGGEQQMLAIARAL+ +P ILLLDEP EGLAP+IV L+ + LV Sbjct: 121 LHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSE 180 Query: 180 QGTGIVLVEQNLKVPMRLAQRQYVLDHGSVAWSGTSAELAQQREHVEAIITT 231 +G +++VEQ+ ++ + L QR VLD G + + S L + ++ ++ Sbjct: 181 EGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGDKLDRLVAV 232 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 179 bits (455), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 100/223 (44%), Positives = 138/223 (61%), Gaps = 3/223 (1%) Query: 1 MIALENAHVRYGQATVLSEVSITASQDEIIAIIGRNGAGKSTTLKTLIGLLPLHHGKRAY 60 ++++ YG + VL V +T + EI++I+GRNGAG+ST LK L+GLLP G + Sbjct: 7 LLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLP-SRGDCRF 65 Query: 61 FGRDISRLPVEQISRLGVALVPDSRRIFPNLSVMENLRMG-GLGHAPGY-WSIPRVLEIF 118 GRDIS LP I+RLG+ VP+SR +FP LSV +NL +G G PG W + +F Sbjct: 66 EGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDDIHALF 125 Query: 119 PRLQERIGFGGDQLSGGEQQMLAIARALLGNPKILLLDEPTEGLAPLIVNNLIDIFALVH 178 P L +R LSGGEQQMLA+ RALLGNP +LL+DEPTEGLAP +V + + Sbjct: 126 PALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQELR 185 Query: 179 RQGTGIVLVEQNLKVPMRLAQRQYVLDHGSVAWSGTSAELAQQ 221 +G ++LVEQ + + L+QR YV+ G + + GT L+ Q Sbjct: 186 TRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQ 228 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 178 bits (452), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 95/220 (43%), Positives = 132/220 (60%), Gaps = 2/220 (0%) Query: 1 MIALENAHVRYGQATVLSEVSITASQDEIIAIIGRNGAGKSTTLKTLIGLLPLHHGKRAY 60 M+ + H YG L VS+ + EI+ +IG NGAGK+T L TL G G+ + Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 61 FGRDISRLPVEQISRLGVALVPDSRRIFPNLSVMENLRMGGL--GHAPGYWSIPRVLEIF 118 G+DI++L +I R G+A+ P+ RR+FP+L+V+ENL+MG + I V +F Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 121 Query: 119 PRLQERIGFGGDQLSGGEQQMLAIARALLGNPKILLLDEPTEGLAPLIVNNLIDIFALVH 178 PRL+ER +SGGEQQMLAI RAL+ P++LLLDEPT GLAPL++ + DI + Sbjct: 122 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR 181 Query: 179 RQGTGIVLVEQNLKVPMRLAQRQYVLDHGSVAWSGTSAEL 218 G + LVEQN + +A R YVL++G V S T A L Sbjct: 182 ESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANL 221 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 177 bits (450), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 97/226 (42%), Positives = 137/226 (60%), Gaps = 2/226 (0%) Query: 1 MIALENAHVRYGQATVLSEVSITASQDEIIAIIGRNGAGKSTTLKTLIGLLPLHHGKRAY 60 ++ ++ H Y A +L + + E++A++GRNGAGKSTTLK L+GLL G+ Sbjct: 5 LLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRL 64 Query: 61 FGRDISRLPVEQISRLGVALVPDSRRIFPNLSVMENLRMGGLGHAPG--YWSIPRVLEIF 118 GRDI +L Q +RLG+ VP+ RRIF LSV+ENL G PG +W+ + E+F Sbjct: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQALFELF 124 Query: 119 PRLQERIGFGGDQLSGGEQQMLAIARALLGNPKILLLDEPTEGLAPLIVNNLIDIFALVH 178 P L G ++SGGEQQML IAR L+GNP++LLLDEP+EG+AP+IV + + + Sbjct: 125 PNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQELK 184 Query: 179 RQGTGIVLVEQNLKVPMRLAQRQYVLDHGSVAWSGTSAELAQQREH 224 R G I+L EQNL + R Y+LD G + +GT A L ++ Sbjct: 185 RSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQQQ 230 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.139 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 790,129 Number of extensions: 35495 Number of successful extensions: 489 Number of sequences better than 1.0e-08: 118 Number of HSP's gapped: 335 Number of HSP's successfully gapped: 130 Length of query: 237 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 155 Effective length of database: 1,231,600 Effective search space: 190898000 Effective search space used: 190898000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)