BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0259.p
         (407 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313114|ref|YP_003777206.1| acetyl-CoA acetyltransferase [H...   119   4e-28

>gi|300313114|ref|YP_003777206.1| acetyl-CoA acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score =  119 bits (299), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 171/395 (43%), Gaps = 37/395 (9%)

Query: 2   SHSKTYIVGVGITAFAKQLDTSVKELVRQAVSAALKDAGCESDVLQGAYFATAGQGAIEG 61
           S S   I G   + F K      + L+ Q   AA++ AG + + +   +  T   G +  
Sbjct: 4   SASSPCITGWHHSQFGKLDGIDPEVLIGQVAKAAIEHAGLQPEDIDSVHVGTFNAGFLYQ 63

Query: 62  QYMVSGQIALRAM-GITGIPVTNVENACASSSTALNAAHMFVSSGAGDICLAVGVDKLFS 120
            +  S  + L  +  +   P T +ENACA+ S A+++    + +G     L +G +K+  
Sbjct: 64  DFPSS--LVLNTLPQLRFKPATRLENACATGSAAIHSGLQAIKAGESKHVLVIGFEKM-- 119

Query: 121 TDKEKSFAVFDGAWDVHTAAEQMKXDPDILPPPDYV--EPGKRSVFMDIYASLARLHMKA 178
                             A  Q+    ++L    Y   E G    F  ++  +A+ +   
Sbjct: 120 ---------------TELATPQVG---EVLLKACYAKEEAGIPGGFAGVFGKIAQSYFDR 161

Query: 179 FGTTQRQIAAVAAKNHTHSTRNPQAQFQYPLTIEEVLAAR----AVSWPLTLPMCAPISD 234
           FG     +A +AAKNH +   NP A  +     E           V+ PL    C+ ISD
Sbjct: 162 FGDQSDALAMIAAKNHKNGMVNPYAHMRKDFGFEFCRNVSDKNPYVAGPLKRTDCSLISD 221

Query: 235 GAAAAIV----CNEAGLRKLQANRAIRIHATVLRSATERPAGAFDRHLCHLAANQAYEIA 290
           GAAA ++      +A  R +Q   A+  H       + R    F+     LA  +A   A
Sbjct: 222 GAAALVISAADVAKAMPRAVQFRAAV--HVNDFLPLSRRDPTRFEA--AELAWKKALGDA 277

Query: 291 GVGPQDMSLAEVHDATAFAEITQTEALGFCAFGEGGPMAESGATTLGGKIPINVSGGLLS 350
            +   D+SL E HD    AE+ + EA+G    G+G  +   G T   GK+P+N SGGL S
Sbjct: 278 SLTLNDLSLVETHDCFTVAELLEYEAMGLAPHGQGARVIAEGITAKDGKLPVNPSGGLKS 337

Query: 351 RGHPIGATGLAQVYEMVTQLRGEAGSRQVDKARFA 385
           +GHP+GATG++       Q   +AG  Q+  AR+A
Sbjct: 338 KGHPVGATGVSMHVMAAMQAAHDAGDMQIANARYA 372


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,245,415
Number of extensions: 51561
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,207,925
Effective search space: 386536000
Effective search space used: 386536000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)