BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0246.p
         (293 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312208|ref|YP_003776300.1| assimilatory nitrate reductase ...   504   e-144

>gi|300312208|ref|YP_003776300.1| assimilatory nitrate reductase
           large subunit [Herbaspirillum seropedicae SmR1]
          Length = 922

 Score =  504 bits (1299), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 237/293 (80%), Positives = 259/293 (88%)

Query: 1   MTRTGKSARLADHVPESFVDMHPQDALRYGVREGSLARISSRWGAMVARVQHSGGIARGS 60
           MTRTG+SA LA H+PESF+D+HPQDAL YGVREG LARISSRWGAMVARVQH GGIARGS
Sbjct: 621 MTRTGRSATLASHIPESFIDIHPQDALLYGVREGGLARISSRWGAMVARVQHGGGIARGS 680

Query: 61  VFVPIHWSNQTASDARVGALVNPVVDPVSGEPEFKHTPVNIEEFGVSWHGFILSRKALAL 120
           VFVPIHW+ Q+ASDARVGA+VNPVVDPVSGEPEFKHTPV IEEF VSWHGFIL+R AL L
Sbjct: 681 VFVPIHWNGQSASDARVGAVVNPVVDPVSGEPEFKHTPVAIEEFRVSWHGFILTRHALDL 740

Query: 121 DEITHWTRIQGRDFARYELAGRNAIGDHSAWARKLLGVHDIDADWLEYEDRTAGVYRAVH 180
           D++THWTR+QGRDF RYELAGRN I DHSAWAR LLGV D  ADWLEYED + G YRAVH
Sbjct: 741 DQVTHWTRVQGRDFMRYELAGRNHIPDHSAWARSLLGVQDPQADWLEYEDLSDGSYRAVH 800

Query: 181 VDNDRIDMCIFLSKRPDLPSRAWLASLFDKEQLEEADRVGLLIGQPIEKGADTGPTVCSC 240
           V  DRIDMC+F+S RPDLPSR+WLA LF KE+LEEADRVGLL+GQPIEKGADTGPTVCSC
Sbjct: 801 VVEDRIDMCLFMSARPDLPSRSWLAGLFAKEKLEEADRVGLLVGQPIEKGADTGPTVCSC 860

Query: 241 FGVGRNTICNAVREQGLKTVAEVTACLKAGGNCGSCVPEIRKLMVETMAAETA 293
           FGVGRNTICNA+R QGL  V +VTACLKAGGNCGSCVPEI+KL+VE    + A
Sbjct: 861 FGVGRNTICNAIRTQGLSEVGQVTACLKAGGNCGSCVPEIKKLIVEVRLQDAA 913


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 992,554
Number of extensions: 44189
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 209
Effective length of database: 1,222,130
Effective search space: 255425170
Effective search space used: 255425170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)