BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0242.p
         (64 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310476|ref|YP_003774568.1| major facilitator superfamily t...    86   7e-19
gi|300310490|ref|YP_003774582.1| major facilitator superfamily p...    83   4e-18

>gi|300310476|ref|YP_003774568.1| major facilitator superfamily
           transporter protein [Herbaspirillum seropedicae SmR1]
          Length = 449

 Score = 85.5 bits (210), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 47/53 (88%)

Query: 1   VIALINSLGNLGGFVAPTTFGFLEQRTGSIQGGLYALATTSVVAAVVVFFART 53
           VIALINS+GNLGGFVAPT FGFLEQRTGSIQGGL  LA TS+VAA VVF AR+
Sbjct: 388 VIALINSIGNLGGFVAPTAFGFLEQRTGSIQGGLMGLAITSLVAAGVVFLARS 440


>gi|300310490|ref|YP_003774582.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 447

 Score = 83.2 bits (204), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 48/53 (90%)

Query: 1   VIALINSLGNLGGFVAPTTFGFLEQRTGSIQGGLYALATTSVVAAVVVFFART 53
           V+ALINSLGNLGGF AP TFG+LEQ+TGSIQGGL+AL+  S++AAV+VF ART
Sbjct: 376 VLALINSLGNLGGFFAPATFGYLEQKTGSIQGGLFALSGASLLAAVLVFLART 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 145,256
Number of extensions: 3177
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 3
Length of query: 64
Length of database: 1,619,870
Length adjustment: 36
Effective length of query: 28
Effective length of database: 1,449,410
Effective search space: 40583480
Effective search space used: 40583480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)