BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0237.p
         (376 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311452|ref|YP_003775544.1| signal transduction containing ...   443   e-125
gi|300311437|ref|YP_003775529.1| signal transduction containing ...   128   8e-31

>gi|300311452|ref|YP_003775544.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 399

 Score =  443 bits (1139), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/376 (67%), Positives = 297/376 (78%)

Query: 1   LWTALSLHVSPFDENGCDLFSRLFNEFGLGEALGRLSCILTVPNPDKFAGEFGAPPKDTQ 60
           +WTALSLH+SP  E+G  L +RLFNEF L +ALG L+CI+ V +P  FA EF       Q
Sbjct: 24  VWTALSLHISPAVEDGSALLARLFNEFELHDALGGLNCIIPVSDPASFAPEFREQFPQGQ 83

Query: 61  LILRVPVEYCADPARQPLLERLTKMGYGLIADGIPPRTALFPDFIESLSLDCSAGIPADA 120
           L LRVPVE+C DPAR   L+ L   G+ ++ADG+P + A    F+ES+ LD S G   + 
Sbjct: 84  LALRVPVEHCVDPARIDALDWLYSRGFSILADGLPAQGASVFPFVESIVLDASIGKLPET 143

Query: 121 SPWLTRMRGPHLAENVPDPVSFDACRAEGFRWFSGEYPLLPSSNVAQKDAISRGRLVKLL 180
           + WL  +RGPHLAENV D V FDACR +GFRWFSG+Y L P S ++QK++ISR RL+KLL
Sbjct: 144 AQWLHGLRGPHLAENVADAVQFDACRVQGFRWFSGDYALHPDSRLSQKNSISRARLLKLL 203

Query: 181 ELVSHDADVHALEGLLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWL 240
           ELV+ DAD + LE LLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWL
Sbjct: 204 ELVARDADANELESLLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWL 263

Query: 241 QLLLYARFPGDESANPLLPRAAARAAMMEAMCHQIDGDRDEQDRAFIVGMFSLLDVLLTM 300
           QLLLYARFPGDESANPLLPRAAARAAMMEAM   ID  ++E DRAFI GMFSLLD+LL M
Sbjct: 264 QLLLYARFPGDESANPLLPRAAARAAMMEAMAQCIDCTQEELDRAFITGMFSLLDILLGM 323

Query: 301 PLRLIIEPLKLPQDILDALMQRRGRLGRLLDVVERAEYGRIPLRHTDLAAAGVTPEGYCR 360
           PL  IIEPLKLP DI++AL++R GRLG+LLDVVER+E GRIPLRH+DL AAG+  E YCR
Sbjct: 324 PLNDIIEPLKLPVDIVNALVRRSGRLGKLLDVVERSEDGRIPLRHSDLDAAGLDAEVYCR 383

Query: 361 ALIQAYRWASKVSHEA 376
            LIQA+ WA++VS EA
Sbjct: 384 CLIQAFNWATRVSTEA 399


>gi|300311437|ref|YP_003775529.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  128 bits (321), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 171/363 (47%), Gaps = 16/363 (4%)

Query: 25  NEFGLGEALGRLSCILTVPNPDKFAGEFGAPPKDTQLILRVPVEYCADPARQPLLERLTK 84
           +E GL   +G L   + V      +      P D +++L +       P     +  L K
Sbjct: 64  SELGLSNVIGNLQGFINVDAAVLMSDFIYFLPND-KVVLEILETVRVTPELVVRVRELVK 122

Query: 85  MGYGLIADGIPPRTA----LFPDFIESLSLDCSAGIPADA---SPWLTRMRGPHLAENVP 137
            GY    D +   +     L P  ++ + +D     P+     S    R +   LAE V 
Sbjct: 123 AGYVFALDDVVAESQEIEELLP-LVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKVE 181

Query: 138 DPVSFDACRAEGFRWFSGEYPLLPSSNVAQKDAISRGRLVKLLELVSHDADVHALEGLLK 197
               F+ C   GF +F G Y   P     +K   S+  ++ LL L+  + D   +   +K
Sbjct: 182 TLQQFNDCVTFGFDYFQGYYFAKPMILQGKKLEASKMVIMHLLTLLVRNVDNGEIVRFIK 241

Query: 198 QDPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYARFPGDE--SAN 255
           +D ALS  L +LV++  +GF   I +  QA+ +LGRRQL+RWLQ+LL+A    ++  + +
Sbjct: 242 RDVALSLTLLRLVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKEQAHTMS 301

Query: 256 PLLPRAAARAAMMEAMCHQID-GDRDEQDRAFIVGMFSLLDVLLTMPLRLIIEPLKLPQD 314
           PL+  AA R  M+E +  +I  G R   + AF VG+ SL+D L  M +  ++  + +  +
Sbjct: 302 PLMILAATRGKMLELITTRIRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVSTE 361

Query: 315 ILDALMQRRGRLG---RLLDVVERAEYGRIPLRHTDLAAAGVTPEGYCRALIQAYRWASK 371
           I +AL++R G  G   RL++  E+ +  +  ++   L    ++ + +  A   A+ W + 
Sbjct: 362 IREALLRRTGFYGVALRLVECTEQRDQDQAEMQRL-LDELQLSADDFFEAEKHAFEWGNS 420

Query: 372 VSH 374
           +S+
Sbjct: 421 ISN 423


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,152,400
Number of extensions: 47084
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,207,925
Effective search space: 349090325
Effective search space used: 349090325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)