BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0236.p
         (422 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311451|ref|YP_003775543.1| anaerobic coproporphyrinogen II...   696   0.0  
gi|300312505|ref|YP_003776597.1| oxygen-independent coproporphyr...   114   1e-26

>gi|300311451|ref|YP_003775543.1| anaerobic coproporphyrinogen III
           oxidase oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/419 (80%), Positives = 370/419 (88%), Gaps = 7/419 (1%)

Query: 2   IIPIKPVGVSLSSLPSQSGQSGQQDGPAQAALAFLKPGSLQLSALPPLSLYVHFPWCVKK 61
           +I IKPV V+     + +GQ     GPAQAALAFLKPGSLQL+ALPPLSLYVHFPWCV+K
Sbjct: 1   MISIKPVPVT-----AVAGQGA--SGPAQAALAFLKPGSLQLTALPPLSLYVHFPWCVRK 53

Query: 62  CPYCDFNSHEVKGSFPEDIYLDALRADLESALPLIWGRKIYSVFIGGGTPSLLSAAGLDR 121
           CPYCDFNSHEVK  FPE  YLDALR DLE ALPLIWGRKIYS+FIGGGTPSLLSAAGLDR
Sbjct: 54  CPYCDFNSHEVKDGFPEQEYLDALRLDLEQALPLIWGRKIYSIFIGGGTPSLLSAAGLDR 113

Query: 122 LLSDIRTLLPLDIDIEITMEANPGTFEAEKFKSYRASGINRLSIGIQSFNSAHLAALGRI 181
           LLSD+RTLLPLD DIEITMEANPGTFEA+KF+SYR SGINRLSIGIQSFNSAHL ALGRI
Sbjct: 114 LLSDLRTLLPLDADIEITMEANPGTFEADKFRSYRDSGINRLSIGIQSFNSAHLQALGRI 173

Query: 182 HDGDQARKAVEIAHANFDNFNLDLMYALPSQSVEEARRDIQTAIDCAPPHLSLYHLTLEP 241
           HDG QA +AVEIAHANFDNFNLDLMYALP Q++E+AR DIQTAID APPHLSLYHLTLEP
Sbjct: 174 HDGGQAHQAVEIAHANFDNFNLDLMYALPQQTLEQARTDIQTAIDFAPPHLSLYHLTLEP 233

Query: 242 NTLFAKYPPQVPDDDTSADMQDMITELTGAAGYQHYEVSAYAKPKRQARHNLNYWQFGDY 301
           NTLFAK+PP VPD+DTSADMQDMI ELT  AGY +YEVSAYA+P R+ARHNLNYWQFGDY
Sbjct: 234 NTLFAKFPPAVPDEDTSADMQDMIGELTTQAGYGNYEVSAYAQPGRRARHNLNYWQFGDY 293

Query: 302 LGIGAGAHSKLSFPHRIVRQARHKHPQTYMEKMRTGNAIQEEGEIGRDALGFEFMLNALR 361
           LGIGAGAHSKLSFPHRIVRQ R+KHPQ Y++ ++ G  IQEE EIGRDALGFEFMLNALR
Sbjct: 294 LGIGAGAHSKLSFPHRIVRQMRYKHPQAYLQHIKAGTHIQEEAEIGRDALGFEFMLNALR 353

Query: 362 LEDGFPVNLFNERTGMSINAIDAALNDAEKKGLLYRDHAIIRPTELGRRFLNDLQEMFL 420
           L +GFP NLF ERTG+++N I   L+ AE+KG+LYRDHA+IRPT LGRRFLNDLQE+FL
Sbjct: 354 LTEGFPPNLFAERTGLALNQIGKQLDLAERKGMLYRDHALIRPTPLGRRFLNDLQEIFL 412


>gi|300312505|ref|YP_003776597.1| oxygen-independent
           coproporphyrinogen III oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 483

 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 19/289 (6%)

Query: 43  LSALPPLSLYVHFPWCVKKCPYCDFNSHEVKGSFPEDIYLDALRADLESALPLIWG-RKI 101
           +SA   LSLY+H P+C   C YC  N    K      +YL  L+ ++     L  G  ++
Sbjct: 61  MSAWRALSLYLHIPFCDTICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQV 120

Query: 102 YSVFIGGGTPSLLSAAGLDRLLSDIRTLLPLDIDI--EITMEANPGTFEAEKFKSYRASG 159
             +  GGGTP+ LS   +  L+  IR    L  D   E ++E +P T   E+    R  G
Sbjct: 121 EQLHFGGGTPTYLSDEQMSDLMDHIRHCFTLAPDHVGEYSIEIDPRTVSVERVHKLRQQG 180

Query: 160 INRLSIGIQSFNSAHLAALGRIHDGDQARKAVEIAH-ANFDNFNLDLMYALPSQSVEEAR 218
            NR+S+G+Q F+     A+ R+   +Q  + +  A  A F + ++DL+Y LP Q+V    
Sbjct: 181 FNRISLGVQDFDPEVQLAVNRVQSEEQTLEIIRAARDAGFRSVSIDLIYGLPKQNVMSMS 240

Query: 219 RDIQTAIDCAPPHLSLYHLTLEPNTLFAKYPPQ---VPDDDTSADMQDMITELTGAAGYQ 275
           R +   I  +P  +++Y+    P     +   +   +P  D+  DM  +      +AGY 
Sbjct: 241 RTLAKVIAASPDRIAVYNYAHMPQLFKTQRQIKEEDLPSADSKLDMLSLCIRQLTSAGYV 300

Query: 276 HYEVSAYAKP-------KRQARHNLNYWQFG-----DYLGIGAGAHSKL 312
           +  +  +AKP       ++Q R + N+  +      D +  G  A S +
Sbjct: 301 YIGMDHFAKPTDDLAIAQQQGRLHRNFQGYSTHSETDLVACGVSAISAV 349


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,240,183
Number of extensions: 51595
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 2
Length of query: 422
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,203,190
Effective search space: 401865460
Effective search space used: 401865460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)