BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0235.p
         (194 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311450|ref|YP_003775542.1| xanthosine triphosphate pyropho...   348   2e-97

>gi|300311450|ref|YP_003775542.1| xanthosine triphosphate
           pyrophosphatase [Herbaspirillum seropedicae SmR1]
          Length = 196

 Score =  348 bits (893), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 171/192 (89%), Positives = 180/192 (93%)

Query: 3   QKIVLASNNPGKLREFGALLGEIGLDVRPQGEFDVPEAEEPFATFVENALAKARHASRLT 62
           QKIV+ASNN GKL+EF +LLG IGLDVRPQGEFDVPEAEEPFATFVENALAKARHA+RLT
Sbjct: 5   QKIVMASNNAGKLKEFASLLGGIGLDVRPQGEFDVPEAEEPFATFVENALAKARHAARLT 64

Query: 63  GLPALADDSGVCVNALGGAPGVWSARYAGEPKSDAANNAKLIADLAGHDDKSAYYYCVLV 122
           GLPALADDSGVCVNALGGAPGV+SARYAGEPKSDAANNAKLI +LA H DKSAYYYCVLV
Sbjct: 65  GLPALADDSGVCVNALGGAPGVYSARYAGEPKSDAANNAKLIRELAAHADKSAYYYCVLV 124

Query: 123 YVRHADDPQPVIADGSWHGEIVEEARGAGGFGYDPYFWLPALNRTAAELSAAEKNAHSHR 182
           YVRHADDPQPVIADG W GEIVE+ARG GGFGYDPYF LPAL +TAAELSAAEKNA SHR
Sbjct: 125 YVRHADDPQPVIADGVWKGEIVEQARGEGGFGYDPYFLLPALGKTAAELSAAEKNAVSHR 184

Query: 183 GQALRALVEKLR 194
           GQALRALVEKL+
Sbjct: 185 GQALRALVEKLK 196


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 710,295
Number of extensions: 31449
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 114
Effective length of database: 1,241,070
Effective search space: 141481980
Effective search space used: 141481980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)