BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0226.p (202 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311442|ref|YP_003775534.1| acyl-carrier-protein phosphodie... 304 3e-84 gi|300309901|ref|YP_003773993.1| acyl carrier protein phosphodie... 153 1e-38 gi|300313768|ref|YP_003777860.1| acyl carrier protein phosphodie... 145 3e-36 gi|300313224|ref|YP_003777316.1| [acyl-carrier-protein] phosphod... 141 3e-35 gi|300312299|ref|YP_003776391.1| acyl carrier protein phosphodie... 80 2e-16 >gi|300311442|ref|YP_003775534.1| acyl-carrier-protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 202 Score = 304 bits (779), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 137/202 (67%), Positives = 170/202 (84%) Query: 1 MSTLLHIDSSARYAGSLTRQLSAAYVEQWQAKNAGGKVVQRDLASHILPHITEAMIGAYF 60 MSTLLHIDSSAR GS++RQL+A++V QWQAKN GGKVV RDLA++ LPH++E+M+GAYF Sbjct: 1 MSTLLHIDSSARSGGSISRQLTASFVSQWQAKNPGGKVVHRDLAANALPHLSESMLGAYF 60 Query: 61 TPADQRSAEQQAILAESDKLVDELIAADTLVIGVPMYNFAPPSAFKAWVDHISRVGRTFS 120 TPAD RSAEQ ++ +SD LVDEL+AADT+VIGVPMYNFAPPS KAW+DH+ R GRTF Sbjct: 61 TPADARSAEQAEVIKQSDALVDELLAADTIVIGVPMYNFAPPSTLKAWIDHVFRAGRTFK 120 Query: 121 YGANGPAGLLTGKRAIVILSSGGVYSEGPAQPMDFNGTYIRSVLGFLGITDVELITAEGV 180 Y GP GL+TGK+A++ILS GG+YSEGP + +DF G Y++S LGF+GITDVEL+ AEGV Sbjct: 121 YTETGPVGLVTGKKAVIILSRGGMYSEGPMEALDFQGKYLKSALGFIGITDVELVVAEGV 180 Query: 181 SMGEEKARQTVSQAQEKISAIV 202 SMGEE A+Q V+ A+ KI+A V Sbjct: 181 SMGEEAAKQAVASAEAKINASV 202 >gi|300309901|ref|YP_003773993.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 205 Score = 153 bits (386), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 120/202 (59%), Gaps = 1/202 (0%) Query: 1 MSTLLHIDSSARYAGSLTRQLSAAYVEQWQAKNAGGKVVQRDLASHILPHITEAMIGAYF 60 M+ +L I SS R A SL+ + + E +A +AG V RDL + LPHIT A I Sbjct: 1 MTHVLLITSSPRGADSLSSRFATEIAEGIKASSAGTLKV-RDLIADPLPHITSAYIQGRL 59 Query: 61 TPADQRSAEQQAILAESDKLVDELIAADTLVIGVPMYNFAPPSAFKAWVDHISRVGRTFS 120 T + R+ +Q A +A + +LVDEL AAD +VIG M NF P S KAW DH++ TF+ Sbjct: 60 TAPENRTPDQVAAVALAQELVDELKAADIVVIGSGMINFGPSSQLKAWFDHVTWPSVTFA 119 Query: 121 YGANGPAGLLTGKRAIVILSSGGVYSEGPAQPMDFNGTYIRSVLGFLGITDVELITAEGV 180 Y NGP GLLTGK+ ++ ++GGV+SEG DF Y+ +L F+G++DVE++ EG Sbjct: 120 YDDNGPKGLLTGKKTYLVAAAGGVFSEGIWAAFDFQSNYLLHLLSFIGLSDVEMVCVEGT 179 Query: 181 SMGEEKARQTVSQAQEKISAIV 202 G + A+ ++ + + ++ Sbjct: 180 VFGPDAAKAAIANTEAAVQVLL 201 >gi|300313768|ref|YP_003777860.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 208 Score = 145 bits (365), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 124/201 (61%), Gaps = 3/201 (1%) Query: 4 LLHIDSSARYAGSLTRQLSAAYVEQWQAKNAGGKVVQRDLASHILPHITEAMIGAYFTP- 62 +LH+DSS S +R LSAA VE+ + + +V RDLA+ + H+ + + P Sbjct: 3 ILHLDSSILAEASASRVLSAAVVEELRILHPTAQVSVRDLAAAPIAHLDGPIAAGFRQPG 62 Query: 63 ADQRSAEQQAILAESDKLVDELIAADTLVIGVPMYNFAPPSAFKAWVDHISRVGRTFSYG 122 A+ S E +A A S+ LV + + +D +V+GVPMYNF+ PS KAW+D +++ GRTF Y Sbjct: 63 ANHASPEVRAEQALSETLVSQFLNSDVIVLGVPMYNFSIPSQLKAWLDRVAQPGRTFRYT 122 Query: 123 ANGPAGLLTGKRAIVILSS-GGVYSEGPAQPMDFNGTYIRSVLGFLGITDVELITAEGVS 181 NGP G L+G++A++I S+ GG+YS GPA MD Y+++ GFLGI V + AE + Sbjct: 123 ENGPLG-LSGEKAVIIASTRGGMYSSGPAAVMDHQEAYLKAFFGFLGIERVRFVRAERLI 181 Query: 182 MGEEKARQTVSQAQEKISAIV 202 G E Q++ A +++ ++V Sbjct: 182 KGAELRSQSMRAALDEVPSVV 202 >gi|300313224|ref|YP_003777316.1| [acyl-carrier-protein] phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 203 Score = 141 bits (356), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 79/182 (43%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 4 LLHIDSSARYAGSLTRQLSAAYVEQWQAKNAGGKVVQRDLASHILPHITEAMIGAYFTPA 63 LLH+D+S S++RQLSA V ++ +V+ RDLA+ H++ + A F A Sbjct: 3 LLHLDTSILGEHSVSRQLSADIVAHLRSLQPDLEVIYRDLAAAAPRHLSAEHLAA-FGGA 61 Query: 64 DQRSAEQQAILAESDKLVDELIAADTLVIGVPMYNFAPPSAFKAWVDHISRVGRTFSYGA 123 + +A LA +DEL+ AD LVIG PMYNF+ PS KAW+D ++ G TF+Y Sbjct: 62 EVDDPALRADLALGQACLDELLQADLLVIGAPMYNFSLPSQLKAWIDRVAVAGTTFAYTD 121 Query: 124 NGPAGLLTGKRAIVILSSGGVYSEGPAQ-PMDFNGTYIRSVLGFLGITDVELITAEGVSM 182 GP GLL G+RA + GG Y+EG A+ +D Y+R +LGFLGI DV ++ AEGV+M Sbjct: 122 AGPEGLLKGRRAYIASVRGGQYAEGTAEAALDHQERYLRDLLGFLGIVDVSVVRAEGVAM 181 Query: 183 GE 184 G+ Sbjct: 182 GD 183 >gi|300312299|ref|YP_003776391.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 208 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 9/177 (5%) Query: 4 LLHIDSSARYAGSLTRQLSAAYVEQWQAKNAGGKVVQRDLASHILPHITEAMIGA---YF 60 +LHI+SS+R A S + QL+ ++ + + K+ +V + DL S LP E +GA F Sbjct: 3 ILHINSSSRGADSRSLQLTEVFLRELE-KHKAIEVDRFDLFSGELPAFGELAVGAKMAMF 61 Query: 61 TPADQRSAEQQAILAESDKLVDELIAADTLVIGVPMYNFAPPSAFKAWVDHISRVGRTFS 120 T A+ S EQ+ A + D +AD VI VP++N P K ++D +++ G F Sbjct: 62 TGAEATS-EQKHAWASIKAVFDRFASADAYVINVPLWNNGLPYVLKQFIDVVTQPGWAFG 120 Query: 121 YG-ANGPAGLLTGKRAIVILSSGGVYSEGPAQPM--DFNGTYIRSVLGFLGITDVEL 174 + NG +GLL ++A +I +S GVY G DF+ Y+ L F+GI + ++ Sbjct: 121 FDLENGYSGLLKNRKACIIHAS-GVYHPGIPTNFGSDFSTPYLTDWLKFVGIEEADI 176 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 644,354 Number of extensions: 27393 Number of successful extensions: 93 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 5 Length of query: 202 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 121 Effective length of database: 1,236,335 Effective search space: 149596535 Effective search space used: 149596535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)