BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0225.p
         (446 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311441|ref|YP_003775533.1| membrane-anchored protein [Herb...   699   0.0  

>gi|300311441|ref|YP_003775533.1| membrane-anchored protein
           [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/446 (77%), Positives = 391/446 (87%), Gaps = 6/446 (1%)

Query: 1   MSIVYASLNHPQRVALAAEVHSRPFLHLSAPESLTHLAVYLRDQAGADANHHVAFQHALL 60
           MSIV+ASLNHPQRV LAAEVHSRPFL L+  E+LTHLAVY+R+    + + H + QHALL
Sbjct: 1   MSIVFASLNHPQRVVLAAEVHSRPFLQLTRSETLTHLAVYVREDG--NGSRHASAQHALL 58

Query: 61  SDLCLHFGVTAPGMDAKHFFHDFGRFRLKWECHTEFASYTFAQSHDAALTTDEAFAAAPL 120
            DLC HFGV APG +AKHF+HDFGRFRLKWECHTEFA+YTFAQ+H+ A++TD+AFA APL
Sbjct: 59  DDLCAHFGVVAPGGEAKHFYHDFGRFRLKWECHTEFATYTFAQAHEEAISTDDAFARAPL 118

Query: 121 RHVPQQWLLALQGKIMVAAHVVLERA---PAHDAAAGMARLFEGKLLSSSKVLQGGEIWT 177
            H+PQQWL++L+GK+MVAAHVV+E     PA D A  M R+FEGKL+SSSKVLQGGEIWT
Sbjct: 119 AHIPQQWLISLKGKLMVAAHVVVEPGDDDPA-DTARQMQRIFEGKLMSSSKVLQGGEIWT 177

Query: 178 DFVIQADGFSRFVVRDIDLRDLQGGRLVQRILEIETYRMMALLGLPHALQAGPVLNAIES 237
           DF IQ+DGFSRF+VRDI LR+LQGGRL QRILEIETYRMMALLGLPHA Q+GP+LN IE 
Sbjct: 178 DFKIQSDGFSRFIVRDIGLRELQGGRLAQRILEIETYRMMALLGLPHAQQSGPLLNEIEG 237

Query: 238 DLATLTAAMVDAEHGGGNTSAGHAEDERILRKITGLAARIEKMSLENSYRFSASQAYFRL 297
           DLA LTAAMV +E   G T    AEDER+LRKITGLAARIEK+SLENSYRFSASQAYFRL
Sbjct: 238 DLAALTAAMVQSEQSTGGTPEEQAEDERVLRKITGLAARIEKLSLENSYRFSASQAYFRL 297

Query: 298 VKARIEELRETRVEGVPTIGEFMERRLAPAMDTCTSVAHRQKALAERIAHTNDLLRTRIG 357
           V+ARIEELRE R+EGVPTIGEFMERRLAPAM+TC ++A RQ+ALAERIAHTNDLLRTRIG
Sbjct: 298 VQARIEELREQRIEGVPTIGEFMERRLAPAMNTCQAIARRQEALAERIAHTNDLLRTRIG 357

Query: 358 IVQEQQNRQILESMNARAAQQLRLQQAVEGLSVAAISYYMVGLFGYIGKALKASGIPINP 417
           IVQEQQNRQILESMNARAAQQL+LQQAVEGLSVAAISYY++GL GY GKA KA+G+PINP
Sbjct: 358 IVQEQQNRQILESMNARAAQQLKLQQAVEGLSVAAISYYVIGLIGYAGKAAKAAGLPINP 417

Query: 418 DIATGLMVPVFAAGVWFGLRRLHKSV 443
           D+ATGL+VPV AA VW GLRR+HK +
Sbjct: 418 DLATGLVVPVVAACVWLGLRRMHKGL 443


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,336,604
Number of extensions: 53893
Number of successful extensions: 251
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,203,190
Effective search space: 430742020
Effective search space used: 430742020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)