BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0223.p
         (296 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311439|ref|YP_003775531.1| methylglyoxal synthase [Herbasp...   508   e-145

>gi|300311439|ref|YP_003775531.1| methylglyoxal synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 295

 Score =  508 bits (1309), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/293 (83%), Positives = 264/293 (90%)

Query: 1   MTSSSTRYRIGLAANRAHQDAPNSALVQLLQGSRARIEALQPELVVVGRTLDAIGHLGLL 60
           M+S + RYRIGL ANRAHQDAP+SALVQLL GSR RIE+LQPEL+VVGRTLDAIG + LL
Sbjct: 1   MSSIAPRYRIGLIANRAHQDAPDSALVQLLTGSRHRIESLQPELIVVGRTLDAIGQMNLL 60

Query: 61  PGYPHIERFPYGRQGGLMKLVSRVVDSDPARMLDAIIYLIDPVDPSSTFPEAVALKRQCV 120
           PGY H+ RFPYGR GGLMKLVSR VD DP R LDA+IYLIDPVDPSSTFPEAVALKRQCV
Sbjct: 61  PGYEHLVRFPYGRHGGLMKLVSRTVDEDPERTLDAVIYLIDPVDPSSTFPEAVALKRQCV 120

Query: 121 IHGKPFLSTLAGAQEWFELEAIAGGAAPDPARDGSFRLADEGIALIAHDSMKARMLALAE 180
           IHGKPFLSTLAGAQEWFELEA+A GAAPD + D  FRL  EGIALIAHD+MK+RML LAE
Sbjct: 121 IHGKPFLSTLAGAQEWFELEALANGAAPDASLDDRFRLGQEGIALIAHDAMKSRMLELAE 180

Query: 181 RHFDVLDSFGFRCATGTTGGLLNELAVKIKGEAGRNWVKPFLSGPLGGDAQIAELILEHE 240
           +HF VLD F FRCATGTTGGLLN+LA+KIKGEAGR+WVKPFLSGPLGGDAQIAELILE +
Sbjct: 181 KHFAVLDQFAFRCATGTTGGLLNQLAMKIKGEAGRHWVKPFLSGPLGGDAQIAELILEQQ 240

Query: 241 CRRVLFLEDPHVARQHEADIQLLERAARTVTDYASCMSDEKWGDRWLSLIKQR 293
           CRRVLFLEDPHVARQHEADIQLLERAARTVT YASCMSD KWGDRWL+LI QR
Sbjct: 241 CRRVLFLEDPHVARQHEADIQLLERAARTVTAYASCMSDVKWGDRWLTLIGQR 293


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 930,228
Number of extensions: 38452
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,217,395
Effective search space: 256870345
Effective search space used: 256870345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)