BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0221.p
         (448 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311437|ref|YP_003775529.1| signal transduction containing ...   695   0.0  
gi|300311452|ref|YP_003775544.1| signal transduction containing ...   122   7e-29

>gi|300311437|ref|YP_003775529.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/412 (82%), Positives = 376/412 (91%)

Query: 14  HHAHDFFLARQPILNREQELIGYELLFRNAAFGPANVNDDVSATASVIAHASELGLNNVI 73
           H A DF+LARQPIL+REQ LIGYELLFR+AAFGPANV DDV+ATA+VIAHASELGL+NVI
Sbjct: 13  HQALDFYLARQPILSREQHLIGYELLFRSAAFGPANVKDDVTATAAVIAHASELGLSNVI 72

Query: 74  GSLHGFINVDATVLMSDFINFLPADKVVLEILETVKVTPELVKRVNELVRAGYVFALDDV 133
           G+L GFINVDA VLMSDFI FLP DKVVLEILETV+VTPELV RV ELV+AGYVFALDDV
Sbjct: 73  GNLQGFINVDAAVLMSDFIYFLPNDKVVLEILETVRVTPELVVRVRELVKAGYVFALDDV 132

Query: 134 ITESEDIAQLLPLVKIIKIDVMEVDASKLLKLSVHFKRAQKMLLAEKVETVEQFRDCVTF 193
           + ES++I +LLPLVKIIKIDVMEVD SKLLKLSVHFKRAQK LLAEKVET++QF DCVTF
Sbjct: 133 VAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKVETLQQFNDCVTF 192

Query: 194 GFDYFQGYYFAKPVILQGKKLEASKIVIMHILTLLVRNVDNGEIVRYIKRDVALSLTLLR 253
           GFDYFQGYYFAKP+ILQGKKLEASK+VIMH+LTLLVRNVDNGEIVR+IKRDVALSLTLLR
Sbjct: 193 GFDYFQGYYFAKPMILQGKKLEASKMVIMHLLTLLVRNVDNGEIVRFIKRDVALSLTLLR 252

Query: 254 LVNTPVYGFMKHIDSLGQALIVLGRRQLKRWMQILLFANTEKDKAHTLSPLLILAATRGK 313
           LVNTPVYGF K IDSLGQALIVLGRRQLKRW+QILLFANT+K++AHT+SPL+ILAATRGK
Sbjct: 253 LVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKEQAHTMSPLMILAATRGK 312

Query: 314 MLELITERIRPGRRKMSEIAFTVGIMSLVDALFGMPMETILTQITVSAEIRDALLFRTGF 373
           MLELIT RIRPGRRKMSE+AFTVGIMSLVDALFGM MET+L QITVS EIR+ALL RTGF
Sbjct: 313 MLELITTRIRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVSTEIREALLRRTGF 372

Query: 374 YGEILQLAEATEKADKTPEQMKELLDGLQLSAEDFYELETQAFEWGNNISTN 425
           YG  L+L E TE+ D+   +M+ LLD LQLSA+DF+E E  AFEWGN+IS N
Sbjct: 373 YGVALRLVECTEQRDQDQAEMQRLLDELQLSADDFFEAEKHAFEWGNSISNN 424


>gi|300311452|ref|YP_003775544.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 399

 Score =  122 bits (306), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 182/361 (50%), Gaps = 12/361 (3%)

Query: 65  SELGLNNVIGSLHGFINV-DATVLMSDFINFLPADKVVLEILETVKVTPELVKRVNELVR 123
           +E  L++ +G L+  I V D      +F    P  ++ L +     V P  +  ++ L  
Sbjct: 48  NEFELHDALGGLNCIIPVSDPASFAPEFREQFPQGQLALRVPVEHCVDPARIDALDWLYS 107

Query: 124 AGYVFALDDVITESEDIAQLLPLVKIIKIDVMEVDASKLLKLSVHFKRAQKMLLAEKVET 183
            G+    D +  +    A + P V+ I   V++    KL + +      +   LAE V  
Sbjct: 108 RGFSILADGLPAQG---ASVFPFVESI---VLDASIGKLPETAQWLHGLRGPHLAENVAD 161

Query: 184 VEQFRDCVTFGFDYFQGYYFAKPVILQGKKLEASKIVIMHILTLLVRNVDNGEIVRYIKR 243
             QF  C   GF +F G Y   P     +K   S+  ++ +L L+ R+ D  E+   +K+
Sbjct: 162 AVQFDACRVQGFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVARDADANELESLLKQ 221

Query: 244 DVALSLTLLRLVNTPVYGFMKHIDSLGQALIVLGRRQLKRWMQILLFANTEKDKAHTLSP 303
           D ALS  L +LV++  +GF  HI +  QA+ +LGRRQL+RW+Q+LL+A    D+  + +P
Sbjct: 222 DPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYARFPGDE--SANP 279

Query: 304 LLILAATRGKMLELITERIRPGRRKMSEIAFTVGIMSLVDALFGMPMETILTQITVSAEI 363
           LL  AA R  M+E + + I   + ++   AF  G+ SL+D L GMP+  I+  + +  +I
Sbjct: 280 LLPRAAARAAMMEAMAQCIDCTQEELDR-AFITGMFSLLDILLGMPLNDIIEPLKLPVDI 338

Query: 364 RDALLFRTGFYGEILQLAEATEKADKTPEQMKELLDGLQLSAEDFYELETQAFEWGNNIS 423
            +AL+ R+G  G++L + E +E   + P +  + LD   L AE +     QAF W   +S
Sbjct: 339 VNALVRRSGRLGKLLDVVERSEDG-RIPLRHSD-LDAAGLDAEVYCRCLIQAFNWATRVS 396

Query: 424 T 424
           T
Sbjct: 397 T 397


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,149,032
Number of extensions: 43034
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 2
Length of query: 448
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,203,190
Effective search space: 433148400
Effective search space used: 433148400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)