BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0216.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311433|ref|YP_003775525.1| molybdate ABC transporter perip...   249   1e-67
gi|300312151|ref|YP_003776243.1| molybdate ABC transporter perip...    72   5e-14

>gi|300311433|ref|YP_003775525.1| molybdate ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  249 bits (637), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 124/156 (79%), Positives = 137/156 (87%)

Query: 9   DLVVSAAASLTNAFKDLGAAFEQQNPGVKVINNFGASDILMQQIVRGAPADVFASADQTA 68
           DLVVSAAASLTNAFK+L  +FEQQ+PGVKV++NFGASDILM+QIVRGAPADVFASADQTA
Sbjct: 30  DLVVSAAASLTNAFKELAQSFEQQHPGVKVVSNFGASDILMRQIVRGAPADVFASADQTA 89

Query: 69  MDKAIAEKAVQASTRKNFAANQIVLIVPGDSTLPLASLKDLTQPAVKKVALGNPASVPFG 128
           MDKA+AEKAV  +TRKNFAANQIVLIV   S L   SL DLTQP  K++ALGNPASVPFG
Sbjct: 90  MDKAVAEKAVDPATRKNFAANQIVLIVTQGSRLAPTSLADLTQPDYKRIALGNPASVPFG 149

Query: 129 RYTKTALESAGLWDAILAKGVMAQNVRQSLDYVARG 164
           RYT+TALE AGLW  + AKGVMA+NVR SLDYVARG
Sbjct: 150 RYTRTALEQAGLWSQVQAKGVMAENVRTSLDYVARG 185


>gi|300312151|ref|YP_003776243.1| molybdate ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score = 72.0 bits (175), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 6   HATDLVVSAAASLTNAFKDLGAAFEQQNPGVKVINNFGASDILMQQIVRGAPADVFASAD 65
           HA ++ V+ AA+ T  FK + AAFEQ   G KV+  FG++     QI  GAP ++  +AD
Sbjct: 20  HAEEVHVAVAANFTQPFKQIAAAFEQAT-GHKVVAAFGSTGQFYAQINNGAPFEILLAAD 78

Query: 66  QTAMDKAIAEKAVQASTRKNFAANQIVLIVPGDSTLPLASLKDLTQPAVKKVALGNPASV 125
                    +K   A TR  +A  ++VL       +  A  + L + A + ++L NP   
Sbjct: 79  ADTPALLEKQKTAVAGTRFTYARGKLVLWSAKPGVVD-AQGEILKKGAFEHLSLANPKLA 137

Query: 126 PFGRYTKTALESAGLWDAILAKGVMAQNVRQSLDYVARG 164
           P+G      ++  GL +A+  K V A+NV Q+  ++A G
Sbjct: 138 PYGLAGVQTMQKLGLEEALRPKIVQAENVNQAYQFIASG 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 791,690
Number of extensions: 30459
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)