BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0215.p (206 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme... 335 1e-93 gi|300312150|ref|YP_003776242.1| molybdate ABC transporter perme... 125 2e-30 gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas... 105 3e-24 gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permeas... 96 3e-21 gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 73 2e-14 >gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 224 Score = 335 bits (860), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 167/202 (82%), Positives = 185/202 (91%) Query: 1 VLNLFFGVAAAYGLSRWRSPLRDLIDSILTLPLVLPPTVLGYYLLVLFGKRGTFGAWLSG 60 +LNL GVAAAYGLSRWRS LRD IDS+LTLPLVLPPTVLGYYLLVLFG+RG GAWL Sbjct: 20 LLNLVLGVAAAYGLSRWRSALRDFIDSVLTLPLVLPPTVLGYYLLVLFGRRGALGAWLER 79 Query: 61 LGIELVFTWQGAVIASTIVAFPLVLKSARAAFENVDKQLENAARVLGVSEAGVFFRVSLP 120 +GIELVFTWQGAV+AST+VAFPLVLKSARAAFE+VD Q+E+AARVLGVSEAGVFFRVSLP Sbjct: 80 MGIELVFTWQGAVLASTVVAFPLVLKSARAAFESVDHQMEDAARVLGVSEAGVFFRVSLP 139 Query: 121 LAARGIAAGVLLAFARALGEFGATLMIAGNLPGRTQTLSVAIYEAVQAGDDSTATLLVVI 180 LA RGI AGVLLAFARALGEFGATLM+AGNLPGRTQTLSVAIYEAVQAGDD +ATLLVVI Sbjct: 140 LAMRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVAIYEAVQAGDDGSATLLVVI 199 Query: 181 TSVTCVAVLLIAGRLMPGHTRR 202 TS+TC+ +L++AGRL P ++ Sbjct: 200 TSITCIVLLMVAGRLTPDRAQQ 221 >gi|300312150|ref|YP_003776242.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 125 bits (315), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/197 (41%), Positives = 114/197 (57%), Gaps = 2/197 (1%) Query: 7 GVAAAYGLSRWRSPLRDLIDSILTLPLVLPPTVLGYYLLVLFGKRGTFGAWLSGLGIELV 66 G A+ L+R RS R + +++ LPLVLPP VLG+YLLVL G +G G LG+ L+ Sbjct: 29 GTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLLVLMGPQGPVGQLTQALGLGLL 88 Query: 67 -FTWQGAVIASTIVAFPLVLKSARAAFENVDKQLENAARVLGVSEAGVFFRVSLPLAARG 125 F++ G V+AS + + P V++ + AFE V ++ A L S FF V++PLA G Sbjct: 89 PFSFGGLVLASLLYSMPFVVQPLQNAFEAVGERPMEVAATLRASPLDAFFTVAVPLAGPG 148 Query: 126 IAAGVLLAFARALGEFGATLMIAGNLPGRTQTLSVAIYEAVQAGDDSTATLLVVITSVTC 185 +L FA +GEFG LMI GN+PG+T+ LS+ IY+ V+A + + A L V Sbjct: 149 FLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYDHVEAFEYAQAHRLAGAMLVFS 208 Query: 186 VAVLLIAGRL-MPGHTR 201 VLL+ RL G TR Sbjct: 209 FLVLLVMMRLGRAGKTR 225 >gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 105 bits (262), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 4/203 (1%) Query: 2 LNLFFGVAAAYGLSRWRSPLRDLIDSILTLPLVLPPTVLGYYLLVLFGKRGTFGAWLSGL 61 LNL FGVAAA+ ++++ ++L+ +++ LP + P + G ++LFG +G G WL Sbjct: 92 LNLVFGVAAAWAIAKFEFRGKNLLLTLIDLPFSVSPVISGLIYVLLFGLQGYLGPWLREH 151 Query: 62 GIELVFTWQGAVIASTIVAFPLVLKSARAAFENVDKQLENAARVLGVSEAGVFFRVSLPL 121 I+++F G V+A+ V FP V + ++ + E AA VLG S F+ V+LP Sbjct: 152 DIKILFAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEEAALVLGASGWRTFWHVTLPN 211 Query: 122 AARGIAAGVLLAFARALGEFGATLMIAGNLPGRTQTLSVAIY----EAVQAGDDSTATLL 177 G+ GV+L ARA+GEFGA +++G++ G T T+ + + E G + A+LL Sbjct: 212 IKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTIPLQVEILYNEFNITGAFAVASLL 271 Query: 178 VVITSVTCVAVLLIAGRLMPGHT 200 + VT +I RL H+ Sbjct: 272 AFLALVTLAIKSVIEWRLHQQHS 294 >gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 296 Score = 95.5 bits (236), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/201 (34%), Positives = 110/201 (54%), Gaps = 1/201 (0%) Query: 2 LNLFFGVAAAYGLSRWRSPLRDLIDSILTLPLVLPPTVLGYYLLVLFGKRGTFGAWLSGL 61 LN+ FG A+ L R+R P + +ID+++ LP LP V G L L+ + G G L+ L Sbjct: 90 LNVIFGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLAPL 149 Query: 62 GIELVFTWQGAVIASTIVAFPLVLKSARAAFENVDKQLENAARVLGVSEAGVFFRVSLPL 121 GI++ FT G ++A T + P V+++ + E +++LE AA LG S F RV P Sbjct: 150 GIKVAFTPLGVLVALTFIGLPFVVRTVQPVLEEAERELEEAAASLGASRWQTFTRVIFPT 209 Query: 122 AARGIAAGVLLAFARALGEFGATLMIAGNLPGRTQTLSVAIYEAVQAGDDSTATLLVVIT 181 + G LAFARA GE+G+ + IAGN+P ++ + I ++ D + AT + ++ Sbjct: 210 VLPALLTGFALAFARASGEYGSVVFIAGNMPMVSEITPLFIVTKLEQYDYAGATAIAMVM 269 Query: 182 SVTCVAVLLIAGRLMPGHTRR 202 + VLL+ L+ TR+ Sbjct: 270 LLVSF-VLLLTINLLQAWTRK 289 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 8/186 (4%) Query: 14 LSRWRSPLRDLIDSILTLPLVLPPTVLGYYLLVLFGKRGTFGAWLSGL-GIELVFTWQ-- 70 L R R P + L+ ++LT PL P V+G+ +++L G++G GA +GL G LVF + Sbjct: 101 LQRHRFPGQALLLAMLTFPLAFPGVVVGFMVIMLAGRQGLIGALTNGLFGESLVFAYSLA 160 Query: 71 GAVIASTIVAFPLVLKSARAAFENVDKQLENAARVLGVSEAGVFFRVSLPLAARGIAAGV 130 G + + P V+ + AA E +D LE AAR LG V V LP + + Sbjct: 161 GLFLGYLYFSIPRVILTVVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSG 220 Query: 131 LLAFARALGEFGATLMIAGNLPGRTQTLSVAIY-EAVQAGDDSTATLLVVITSVTCVAVL 189 + FA ++G FG +A N+ L + IY E + +TA L ++ V AVL Sbjct: 221 AICFATSVGAFGTAFTLAANI----DVLPMTIYNEFTGYANFATAASLSIVLGVITWAVL 276 Query: 190 LIAGRL 195 +A L Sbjct: 277 ALARSL 282 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.140 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 587,349 Number of extensions: 20582 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 10 Length of query: 206 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 125 Effective length of database: 1,236,335 Effective search space: 154541875 Effective search space used: 154541875 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)