BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0214.p (228 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311431|ref|YP_003775523.1| sulfate/molybdate ABC transport... 317 5e-88 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 150 9e-38 gi|300312610|ref|YP_003776702.1| spermidine/putrescine ABC trans... 146 2e-36 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 141 5e-35 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 137 5e-34 >gi|300311431|ref|YP_003775523.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 222 Score = 317 bits (812), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 159/222 (71%), Positives = 183/222 (82%), Gaps = 5/222 (2%) Query: 1 VSVAVRIRKELRADDRVFQLDIDFASDSDRIVLYGPSGSGKSLTLKAVAGLMTPDEGRIT 60 +S+ ++I+K+L A DR F LD+ S S RIVLYGPSG+GKSLTLKA+AGLM PD GRI Sbjct: 1 MSLDLQIQKQLHASDRRFALDLSLVSASQRIVLYGPSGAGKSLTLKAIAGLMRPDSGRIR 60 Query: 61 LNRRTLFDAAHGVNVRPQQRNVAYLFQDYALFPHLTVAQNIAFGLQRGCLNLRKPASHPT 120 LN RTLF++ G+++ Q RNVAYLFQDYALFPHL+VAQNIAFGL RGC NLR+PA HP Sbjct: 61 LNGRTLFNSNEGIDLPVQGRNVAYLFQDYALFPHLSVAQNIAFGLARGCFNLRRPAQHPA 120 Query: 121 VARWLQAFGLDATAGSYPSQISGGQRQRVDAQRVALARALVAQPDILLLDEPFSALDLSL 180 VA+WL+AF LD A S P+QISGGQR QRVALARALVA+PDILLLDEPFSALDLSL Sbjct: 121 VAKWLRAFELDDIAHSRPAQISGGQR-----QRVALARALVAEPDILLLDEPFSALDLSL 175 Query: 181 RERMRHELSELQQQLHVPMLIITHDPADVDVLGDAVFEVRDG 222 RERMR EL+ELQ QL VPML+ITHDPADV+ LG VFE+RDG Sbjct: 176 RERMRAELAELQAQLQVPMLLITHDPADVEALGQTVFELRDG 217 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 150 bits (379), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 85/200 (42%), Positives = 117/200 (58%), Gaps = 13/200 (6%) Query: 31 IVLYGPSGSGKSLTLKAVAGLMTPDEGRITLNRRTLFDAAHGVNVRPQQRNVAYLFQDYA 90 + L GPSGSGK+ L+AVAGL +P G I + +R +FD A + ++RN+ +FQ YA Sbjct: 36 VALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVFDGARNFEMPAEERNLGLVFQSYA 95 Query: 91 LFPHLTVAQNIAFGLQRGCLNLRKPASHPTVAR---WLQAFGLDATAGSYPSQISGGQRQ 147 L+PH TVA N+A+GL+ LRK S R L GL YP Q+SGGQ+ Sbjct: 96 LWPHKTVADNVAYGLK-----LRKTPSGEIATRVKAVLSQLGLGHLGERYPHQLSGGQQ- 149 Query: 148 RVDAQRVALARALVAQPDILLLDEPFSALDLSLRERMRHELSELQQQLHVPMLIITHDPA 207 QRVA+ARALV P ++LLDEP S LD LRE R L EL +L + L++THD Sbjct: 150 ----QRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMVTHDQG 205 Query: 208 DVDVLGDAVFEVRDGMVSRQ 227 + + D + + +G + +Q Sbjct: 206 EAMAISDRILLLNNGRIEQQ 225 >gi|300312610|ref|YP_003776702.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 434 Score = 146 bits (368), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 118/194 (60%), Gaps = 11/194 (5%) Query: 33 LYGPSGSGKSLTLKAVAGLMTPDEGRITLNRRTLFDAAHGVNVRPQQRNVAYLFQDYALF 92 L GPSGSGK+ L+AVAGL G I L+ + L GV V +QR + +FQD+ALF Sbjct: 56 LIGPSGSGKTSLLRAVAGLEPAQAGLIRLDGQLL--EGGGVRVPAEQRRIGMVFQDFALF 113 Query: 93 PHLTVAQNIAFGLQRGCLNLRKPASHPTVARWLQAFGLDATAGSYPSQISGGQRQRVDAQ 152 PHL VA NIAFGL RG + A VA L GL +P Q+SGGQ+QR+ Sbjct: 114 PHLNVADNIAFGL-RGRDKRERSA---IVAGMLALVGLPEAGAKFPHQLSGGQQQRI--- 166 Query: 153 RVALARALVAQPDILLLDEPFSALDLSLRERMRHELSELQQQLHVPMLIITHDPADVDVL 212 ALARAL QP +LLLDEPFS+LD+ LRER+ H++ ++ ++ H L++THD + + Sbjct: 167 --ALARALAPQPRLLLLDEPFSSLDVELRERLAHDVRDILKRTHTTALMVTHDQMEAFAV 224 Query: 213 GDAVFEVRDGMVSR 226 D V +R G + + Sbjct: 225 ADVVGVMRQGQLEQ 238 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 141 bits (355), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 126/227 (55%), Gaps = 15/227 (6%) Query: 2 SVAVR-IRKELRADDRVFQLDIDFASDSDRIVLYGPSGSGKSLTLKAVAGLMTPDEGRIT 60 SV +R ++K+ + + +DID A D + VL GPSG GKS L+ +AGL G I Sbjct: 3 SVQIRAVKKQFGSTQIIRGVDIDIA-DGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEIL 61 Query: 61 LNRRTLFDAAHGVNVRPQQRNVAYLFQDYALFPHLTVAQNIAFGLQRGCLNLRKPASHPT 120 + + NV+P+ R++A +FQ+YAL+PH+TV N+AF L + K Sbjct: 62 IGGTVVN------NVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKD--KAFVDER 113 Query: 121 VARWLQAFGLDATAGSYPSQISGGQRQRVDAQRVALARALVAQPDILLLDEPFSALDLSL 180 V + GL+ YP Q+SGGQRQRV A+ RA+V P + L DEP S LD L Sbjct: 114 VKKAADILGLNQLLDRYPRQLSGGQRQRV-----AMGRAIVRDPQVFLFDEPLSNLDAKL 168 Query: 181 RERMRHELSELQQQLHVPMLIITHDPADVDVLGDAVFEVRDGMVSRQ 227 R +MR E+ EL Q+L + +THD + + D + +RDG+V ++ Sbjct: 169 RVQMRTEIKELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQR 215 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 137 bits (346), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 83/196 (42%), Positives = 115/196 (58%), Gaps = 13/196 (6%) Query: 33 LYGPSGSGKSLTLKAVAGLMTPDEGRITLNRRTLFDAAHGVNVRPQQRNVAYLFQDYALF 92 L GPSG GK+ L+ +AGL +PD G++ L+ + A +VR +R V ++FQ YALF Sbjct: 33 LLGPSGCGKTTLLRIIAGLESPDSGQVLLDG----EDASARHVR--ERQVGFVFQHYALF 86 Query: 93 PHLTVAQNIAFGLQRGCLNLRKPAS--HPTVARWLQAFGLDATAGSYPSQISGGQRQRVD 150 H+TV +NIAFGL+ + R + V R L+ LD A YP Q+SGGQRQR+ Sbjct: 87 KHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRLLELVQLDWLADRYPPQLSGGQRQRI- 145 Query: 151 AQRVALARALVAQPDILLLDEPFSALDLSLRERMRHELSELQQQLHVPMLIITHDPADVD 210 ALARAL +P +LLLDEPF ALD +R+ +R L L +LHV + +THD + Sbjct: 146 ----ALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIFVTHDQEEAL 201 Query: 211 VLGDAVFEVRDGMVSR 226 + D V + G V + Sbjct: 202 EVADQVVLMNKGQVEQ 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 654,399 Number of extensions: 24326 Number of successful extensions: 491 Number of sequences better than 1.0e-08: 103 Number of HSP's gapped: 336 Number of HSP's successfully gapped: 108 Length of query: 228 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 146 Effective length of database: 1,231,600 Effective search space: 179813600 Effective search space used: 179813600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)