BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0213.p
         (434 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillu...   848   0.0  
gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate ph...    92   9e-20

>gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillum
           seropedicae SmR1]
          Length = 434

 Score =  848 bits (2192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/434 (93%), Positives = 420/434 (96%)

Query: 1   MTTREQQIQALAKDWAENPRWAGVKRNYSADDVVRLRGSVQIEHTLAKRGAEKLWNLVNN 60
           M+TREQQIQAL +DWAENPRW G+KRNYSA DVVRLRGS+QIEHT+AKRGA+KLWNLVNN
Sbjct: 1   MSTREQQIQALERDWAENPRWKGIKRNYSAADVVRLRGSLQIEHTIAKRGADKLWNLVNN 60

Query: 61  EPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPMVVK 120
           EPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPMVVK
Sbjct: 61  EPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPMVVK 120

Query: 121 RINNTFQRADQIQWSEGKNDIDFFAPIVADAEAGFGGVLNAYELMKSMIDAGAAGVHFED 180
           RINNTF RADQIQWSEGK+DIDFFAPIVADAEAGFGGVLNA+ELMKSMI+AGAAGVHFED
Sbjct: 121 RINNTFARADQIQWSEGKDDIDFFAPIVADAEAGFGGVLNAFELMKSMIEAGAAGVHFED 180

Query: 181 QLASVKKCGHMGGKVLVPTREAVEKLNAARLAADVSGTSTLVIARTDAEAADLLTSDVDD 240
           QLASVKKCGHMGGKVLVPTREAVEKLNAARLAADV GT TLVIARTDAEAADLLTSDVD 
Sbjct: 181 QLASVKKCGHMGGKVLVPTREAVEKLNAARLAADVMGTKTLVIARTDAEAADLLTSDVDA 240

Query: 241 NDKPFLTGERTVEGFFKTRPGIDQAISRGLAYSEYADLVWCETGKPDLAFAKKFAEAIHA 300
           NDKPFL+GERTVEGFFKT PGIDQAISRGLAY+EYAD+VWCETGKPDLAFAK FAEAIHA
Sbjct: 241 NDKPFLSGERTVEGFFKTHPGIDQAISRGLAYAEYADMVWCETGKPDLAFAKTFAEAIHA 300

Query: 301 KFPGKMLSYNCSPSFNWKKNLDDATIAKFQKELGAMGYKFQFITLAGFHALNYSMFNLAH 360
           KFPGK+L+YNCSPSFNWKKNLDDATIAKFQ+ELGAMGYKFQFITLAGFHALNYSMFNLAH
Sbjct: 301 KFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHALNYSMFNLAH 360

Query: 361 GYARNQMSAFVELQEAEFAAADKGFTAVKHQREVGTGYFDAVTQAIQQGQSSTTALHGST 420
           GYARNQMSAFVELQEAEFAAA KGFTAVKHQREVGTGYFDAVTQAIQQGQSSTTALHGST
Sbjct: 361 GYARNQMSAFVELQEAEFAAATKGFTAVKHQREVGTGYFDAVTQAIQQGQSSTTALHGST 420

Query: 421 EDEQFFDGAEKKVA 434
           EDEQFFD   KK A
Sbjct: 421 EDEQFFDDKAKKAA 434


>gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate
           phosphonomutase [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score = 92.0 bits (227), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 130/311 (41%), Gaps = 70/311 (22%)

Query: 58  VNNEPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEM-YPDQSLYPANSVP 116
           V  E  +  +GA+  N A+   +AG +AIYLSG  VA     AG +  PD  +   + V 
Sbjct: 14  VQEESPLQVIGAINANHALLAKRAGFRAIYLSGGGVA-----AGSLGLPDLGISNLDDVL 68

Query: 117 MVVKRINNTFQRADQIQWSEGKNDIDFFAPIVADAEAGFGG-VLNAYELMKSMIDAGAAG 175
             V+RI +                     P++ D + GFG    N    +KSMI  GAA 
Sbjct: 69  TDVRRITDVCD-----------------LPLLVDVDTGFGASAFNVARTVKSMIKFGAAA 111

Query: 176 VHFEDQLASVKKCGHMGGKVLVPTREAVEKLNAARLAADVSGTSTLVIARTDAEAADLLT 235
           +H EDQ+ + K+CGH   K +V  +E V+++ AA  A   +  + +++ARTDA A +   
Sbjct: 112 MHIEDQVGA-KRCGHRPNKEIVSKQEMVDRIKAAVDAR--TDENFVIMARTDALAVE--- 165

Query: 236 SDVDDNDKPFLTGERTVEGFFKTRPGIDQAISRGLAYSEY-ADLVWCETGKPDLAFAKKF 294
                                    G+D AI R +A  E  AD+++ E    DLA  K+F
Sbjct: 166 -------------------------GLDAAIERAVACVEAGADMIFPE-AITDLAMYKQF 199

Query: 295 AEAIHAKFPGKMLSYNCSPSFNWKKNLDDATIAKFQKELGAMGYKFQFITLAGFHALNYS 354
           A A+       +  +  +P F                EL           L+ F A+N +
Sbjct: 200 ANAVKVPILANITEFGSTPLFTV-------------DELKGADVGLVLYPLSAFRAMNKA 246

Query: 355 MFNLAHGYARN 365
             N+     R+
Sbjct: 247 AENVYQAIRRD 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,355,017
Number of extensions: 57090
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 434
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 346
Effective length of database: 1,203,190
Effective search space: 416303740
Effective search space used: 416303740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)