BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0212.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310599|ref|YP_003774691.1| aromatic compounds catabolic pr...   129   9e-32

>gi|300310599|ref|YP_003774691.1| aromatic compounds catabolic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 181

 Score =  129 bits (325), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 82/121 (67%)

Query: 27  APGVASMDELKAGSGMDFLQRIWDGKLPSVPIGETMDFIPIDGEPGRIVFQGTPGKQHYN 86
           A GVA M+++   SGM+ L  +  G LPS P+ ETM+   ++ + G  VFQG P  +H+N
Sbjct: 27  ALGVARMEQIAGKSGMEILSAMMSGALPSPPMNETMNMTLLELDEGSAVFQGIPLLRHFN 86

Query: 87  PLGSVHGGYFCTLLDSAVGCAVHSVLPQGMGYTTLELKVNLIRALTATTGPVRXKKKKRR 146
           P+G+VHGG+F TLLDSA+GCAV + LP G  YTT+EL VN++RA +  TGP+R   +   
Sbjct: 87  PMGTVHGGWFATLLDSALGCAVQTTLPAGQSYTTVELSVNIVRAASQQTGPLRAAARVLH 146

Query: 147 R 147
           R
Sbjct: 147 R 147


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 571,980
Number of extensions: 24324
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)