BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0211.p
         (742 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311429|ref|YP_003775521.1| transmembrane protein [Herbaspi...  1136   0.0  

>gi|300311429|ref|YP_003775521.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 743

 Score = 1136 bits (2939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/741 (76%), Positives = 635/741 (85%), Gaps = 6/741 (0%)

Query: 1   MHYALDIRTFLFSHYFYTGLRIATGVVGLTMLVFNMADMQTTMTVFLGALCTSLMDLPSP 60
           MHYALDIRTFLFSHYFYTG+RIA GVVGLT+LVFN+ADM TTMTVFLGALCTSLMDLPSP
Sbjct: 1   MHYALDIRTFLFSHYFYTGVRIAIGVVGLTLLVFNVADMPTTMTVFLGALCTSLMDLPSP 60

Query: 61  LRHKFNEMLAGVLLCTLVMLVISLCAPIHWLVSVAMVLVSFLASMMVVYGKKTLPLQFAA 120
           LRHKFNEMLAGVLLCT+VML+ISLCAPI WLVS  MV+VSF ASMMVVYGKKT+PLQFAA
Sbjct: 61  LRHKFNEMLAGVLLCTVVMLLISLCAPIPWLVSAMMVVVSFFASMMVVYGKKTMPLQFAA 120

Query: 121 LMVMTLSMENSVPFDEAFLHAGFFLAGGLGYLTYSMIVSYFLRRRVKQQVLAEALFELAR 180
           LMVMTLSMEN VP  +AFLHA  FL GGLGYL YSM VS+FLRRR+KQQVLAEALFELAR
Sbjct: 121 LMVMTLSMENQVPIADAFLHAALFLGGGLGYLAYSMAVSWFLRRRIKQQVLAEALFELAR 180

Query: 181 YLRIKADFYDVRSDLQTQFTTLVRQQIVLADKLQASRDLVLRDMHTKQDGLLVHVHLSML 240
           YLRIKA+FYDVR DL  QF  LVRQQIV+ADK QASRDL+LRD++TKQDGLLV VHLSML
Sbjct: 181 YLRIKAEFYDVRHDLAGQFNQLVRQQIVVADKQQASRDLILRDLYTKQDGLLVQVHLSML 240

Query: 241 ELYEQVLSTHADYALLRSHFGDTDVIIFLRDLANKTAEDIESIAYAVTRKRVSTPTVNYK 300
           ELYEQVLSTHADYA LR HFGD DV++FLRDLANK A+DIESIAYA+TR + S PTVNYK
Sbjct: 241 ELYEQVLSTHADYAFLRQHFGDADVMVFLRDLANKAAQDIESIAYAITRNKASEPTVNYK 300

Query: 301 AELRAVQYEMQQLQQDNLAGQIPDEAITVLRVTYNKILDIIELISQLHLATQTPIDAIPI 360
           AELRAVQ+EM +L Q     Q  +EA+T+LRVTYNKI DIIELISQ+H ATQ P+D IPI
Sbjct: 301 AELRAVQFEMHELAQPG-PRQASEEALTILRVTYNKIRDIIELISQVHQATQNPVDPIPI 359

Query: 361 LPGSDMTPFLTQQKYKAGLLIANLRWQSPIFRFAIRVALAVSTGLWIAAHLPYMSHGYWI 420
           LPGSDMTPFLTQQK+K  +L+ NLRWQSPIFRFAIRVALAV+TGLWIA  LPYMSHGYWI
Sbjct: 360 LPGSDMTPFLTQQKFKFNMLLVNLRWQSPIFRFAIRVALAVTTGLWIANQLPYMSHGYWI 419

Query: 421 VLTIVIILKPNFSSTKQRMSDRLIGTIIGCLLTALILRFVHDPMGLLAVLFIASVAAPAF 480
           VLTIVIILKPNFS+TKQRM+DRLIGT+IGCL+T LILRFVH+P+G LAVLF ASVAAPAF
Sbjct: 420 VLTIVIILKPNFSATKQRMADRLIGTVIGCLITMLILRFVHNPLGQLAVLFAASVAAPAF 479

Query: 481 TYVKYRYTAIAASVQILMLLNLLLPAGHHGAVGERLVDTIIGVAIATIFSYVLPSWEYRD 540
           TY+KYRYTAIAASVQILMLLNLL+PAGH G +GERL+DTIIGV IAT+FSYVLP+WEYRD
Sbjct: 480 TYIKYRYTAIAASVQILMLLNLLVPAGHQGVIGERLIDTIIGVVIATVFSYVLPAWEYRD 539

Query: 541 LPRLLKNVLHASHRYIKASRDMLEGKVNDDFFYRVCRKGFMDSLSALISAQVRMMDEPIS 600
           LP+LL+NVL +S RY+ ASRDMLEGKV DDFFYRVCRKGFMDSL+ALISA VRMMDEP +
Sbjct: 540 LPKLLRNVLKSSQRYLTASRDMLEGKVQDDFFYRVCRKGFMDSLAALISALVRMMDEPAT 599

Query: 601 KQRAVREINRFVVQNYLVAAHIAALRILLRRHAEGLPRDPVNKLIEQTYQSATAHLLHAQ 660
           KQRAVRE+NRF+VQNYLVAAHIAALR++LRRH E LP+  V++LIE+TY  A+ HL  AQ
Sbjct: 600 KQRAVRELNRFIVQNYLVAAHIAALRLMLRRHQENLPQAQVSRLIEETYLEASQHLAEAQ 659

Query: 661 TILAGPDGTTAATVPVEEVVPVNPLAETVAAEDIA-LATQP---DAAEWSGWHTFRRRAA 716
            +LA         V V    P +  A +   E I  L  +P   +A+ WSGW   RRR +
Sbjct: 660 RLLAPQPRKRGGAVTVSPQAPQDK-ALSGKIELIGPLPPEPVPAEASAWSGWDNLRRRTS 718

Query: 717 LLDNDLQEIVAQTGAIESILR 737
           LL+ DL+EIV QT AI+ ILR
Sbjct: 719 LLNQDLKEIVVQTAAIDQILR 739


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,959,654
Number of extensions: 72903
Number of successful extensions: 328
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 2
Length of query: 742
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 650
Effective length of database: 1,184,250
Effective search space: 769762500
Effective search space used: 769762500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 134 (56.2 bits)