BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0202.p
         (725 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311422|ref|YP_003775514.1| fusaric acid resistance membran...  1169   0.0  

>gi|300311422|ref|YP_003775514.1| fusaric acid resistance membrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 734

 Score = 1169 bits (3025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/724 (81%), Positives = 643/724 (88%), Gaps = 2/724 (0%)

Query: 1   LHDAAADWWQTDFPNWIYVFKMVFAGLLALGIGYALDLESPRSGLITVFIVMQPQSGMIL 60
           L +AAADWW++D P W+YVFKMV AGLLALGIGY LDLESPRS LITVFIVMQPQSGMIL
Sbjct: 12  LREAAADWWRSDAPTWVYVFKMVLAGLLALGIGYGLDLESPRSALITVFIVMQPQSGMIL 71

Query: 61  AKSFYRVIGTLVGSAAVVVFVGLFAQTPELFLLATACWIGLCTVGSAHNRNFRSYGFVLS 120
           AKSFYRVIGTLVGS A+VVFVGLFAQTPELFLLA+A WIGLCTVGSAHNRNFRSYGFVLS
Sbjct: 72  AKSFYRVIGTLVGSMAIVVFVGLFAQTPELFLLASALWIGLCTVGSAHNRNFRSYGFVLS 131

Query: 121 GYTVALIGIPAALNPALTFDSVMTRVTEITVGIVCAGVVSALVFPQASAPGLVRIIRGRF 180
           GYTVALIG+PAAL+PA+TFDSVMTRVTEI VGIVC G+VSALVFPQASAPGLVRIIRGRF
Sbjct: 132 GYTVALIGLPAALHPAITFDSVMTRVTEIMVGIVCVGLVSALVFPQASAPGLVRIIRGRF 191

Query: 181 TAFVDLIGNTLGGSADRKALEATNARFVGDIIGLEALRSSAIFEDPEIRLRSGRLTRMNS 240
           TAFVDLI  TLGGSADRK LEATNARFVGDIIGLEA+RS+AIFEDPE+RLRSGRLTRMNS
Sbjct: 192 TAFVDLISATLGGSADRKQLEATNARFVGDIIGLEAMRSAAIFEDPEVRLRSGRLTRMNS 251

Query: 241 EFMALSTRVHALHQLMNRLHDSRNPSAQLVIDAISPYFREVQPLLTRSGGEPVMTAIDAA 300
           EFMALSTR+HALHQLMNRLH +   SAQ+VIDAISPYFREVQPLLTR+ GEPVM+A+DAA
Sbjct: 252 EFMALSTRMHALHQLMNRLHANPAASAQVVIDAISPYFREVQPLLTRASGEPVMSALDAA 311

Query: 301 DAALKLESYKQELPRRVRATRDAHTRSQELDDDAVLDFDTASELLYRVIEELHAYTLTYA 360
           DAALKL++YK+ELPRRVRATR      Q   D A+LDFDTASELLYRVIEELHAYTLTYA
Sbjct: 312 DAALKLDAYKRELPRRVRATRST-LAGQCQSDSAMLDFDTASELLYRVIEELHAYTLTYA 370

Query: 361 SLVQRRHEREQWEHVYAPKTSMVTASIAGARAAITLIGLSTFWILSGWPSGDVAALNAAA 420
           S+ QR HEREQWEH YAPKTSM TA IAGARAA+ ++ L+ FWI SGWPSGDVA LNAAA
Sbjct: 371 SMTQRHHEREQWEHSYAPKTSMTTALIAGARAAVVMLCLAGFWIASGWPSGDVAVLNAAA 430

Query: 421 FCAITSAAPDPAKATRTVTMGVALAVVLGYFYTFHIVPQLDGFWMLAAALTPVLMLAVLL 480
           FCAITSAAPDPAKATRTV +GV  A V GY YTFHI+P+LDG+WMLA+AL PVLMLAV L
Sbjct: 431 FCAITSAAPDPAKATRTVAIGVLFAAVAGYVYTFHILPRLDGYWMLASALMPVLMLAVYL 490

Query: 481 TTKPTLAGYGLGICIFFPFVAVPDNLAHFNAAGYLNESIALMLSLVVTTVAFMVLLPPTT 540
           TTKP  AGYGLGICIFFPF+AVPDN AHFNAAGYLNES+AL++SL+VT VAFMVLLPPTT
Sbjct: 491 TTKPKWAGYGLGICIFFPFLAVPDNFAHFNAAGYLNESVALVVSLLVTAVAFMVLLPPTT 550

Query: 541 NWTVRHLEKQLRKQVVQACFGKLAHLALQFESGTRDLMHQITMLTGSRPALRKDAFGWMF 600
           +WTVR LEKQLRKQVV ACFGKLAHLAL+FESGTRDLMHQITM T SRP LR+ A GWMF
Sbjct: 551 DWTVRVLEKQLRKQVVDACFGKLAHLALKFESGTRDLMHQITMFTTSRPLLRQKALGWMF 610

Query: 601 ATLEIGHAIIELRTELHGIRSGNPGLLSPAAYAALDRLREALPALFRQPTPATLAAVLDA 660
           ATLE+GHAIIELR ELHGIR+  P LL  +AYAAL+RLREA+PALF QP+  TLA+ L A
Sbjct: 611 ATLEVGHAIIELRNELHGIRTEAPDLLPASAYAALNRLREAIPALFAQPSATTLASALAA 670

Query: 661 NNRTIAEVQQAIGPHYRERSERHRLQRTLSYLHFIRTALLDPQSPLQPMHQNGDAATSSG 720
           N+ TIAEVQ AIGPHYRERSERHRLQRTLSYLHFIRTALLD QSPL  M + G    ++G
Sbjct: 671 NDATIAEVQTAIGPHYRERSERHRLQRTLSYLHFIRTALLDEQSPLHTM-RAGATNNTTG 729

Query: 721 AHHA 724
             HA
Sbjct: 730 ERHA 733


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,271,981
Number of extensions: 97142
Number of successful extensions: 501
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 1
Length of query: 725
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 633
Effective length of database: 1,184,250
Effective search space: 749630250
Effective search space used: 749630250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 134 (56.2 bits)