BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0198.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311418|ref|YP_003775510.1| NRAMP family Mn2+/Fe2+ transpor...   484   e-138

>gi|300311418|ref|YP_003775510.1| NRAMP family Mn2+/Fe2+ transporter
           protein [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score =  484 bits (1247), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 248/299 (82%), Positives = 274/299 (91%)

Query: 1   LGVSLPVGVLLTALDTVIVLGLQGRGFRQVEAIILGLVVTIAVCLFAQLAFVKADWHAVV 60
           LGVSLPVGVLLTALDT+IVLGL+GRGFRQVEAIILGLV+TIA CL AQLAFVKADWH V+
Sbjct: 148 LGVSLPVGVLLTALDTLIVLGLKGRGFRQVEAIILGLVITIAACLLAQLAFVKADWHEVM 207

Query: 61  QGFVPSLAALSSREPLYLAIGVLGATVMPHNLYLHSSIVQTRAVKRDRAGLLEAIRYTRV 120
           QGFVPSL A+SSREPLYLAIG++GATVMPHNLYLHSSIVQTR+V+RD A LLEA+RYTRV
Sbjct: 208 QGFVPSLQAISSREPLYLAIGIIGATVMPHNLYLHSSIVQTRSVQRDPASLLEAVRYTRV 267

Query: 121 DTTVSLLIAMAINAAILILAASAFHRSGRTDVVDLDVAYHLLDPITGTSLAAILFGVGLF 180
           DTTVSLLIAM INA ILILAA+AFH+SG T V +LD AYHLLDPITG+++AAILFGVGLF
Sbjct: 268 DTTVSLLIAMVINATILILAAAAFHKSGNTQVAELDEAYHLLDPITGSAMAAILFGVGLF 327

Query: 181 AAGQSSTFTGTIAGQVIMEGFLKLKIPCWQRRLVTRGLALIPALIGVLTLGEHSVGRLLV 240
           A+GQSSTFTGTIAGQVIMEGFLKLKIPCWQRR++TR LAL+PALIGVLTLG HSVG+LLV
Sbjct: 328 ASGQSSTFTGTIAGQVIMEGFLKLKIPCWQRRVITRALALVPALIGVLTLGPHSVGKLLV 387

Query: 241 LSQVVLSLQLPFAMFPLIRLTSRRDLMGDFANPVWLAALVWMLFLGISAANTWLVVQLF 299
            SQVVLSLQLPFAM+PLIRLTSRRDLMGD  N  W++ L W+LF  ISAAN WLV Q+F
Sbjct: 388 ASQVVLSLQLPFAMYPLIRLTSRRDLMGDLVNRWWVSGLAWVLFAAISAANVWLVWQVF 446


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 855,404
Number of extensions: 33294
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)