BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0190.p
         (411 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis prot...   624   e-180
gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA...   261   7e-71

>gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score =  624 bits (1608), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 306/413 (74%), Positives = 351/413 (84%), Gaps = 8/413 (1%)

Query: 3   AKPPLLSVAEALKFLLKSAVPLNQAETIPTLEANGRVLAAPQVSQINVPGMDNSQMDGYA 62
           A+ P+ SV++AL+ LL +AVP+ Q E I TL+A  RVLA P  + I+VPGMDNSQMDGYA
Sbjct: 17  ARAPMQSVSQALETLLSAAVPVAQREIIDTLDACERVLAEPVTASIDVPGMDNSQMDGYA 76

Query: 63  VRAAECASGETRLRVSQRIPAGHVGVALEPGTAARIFTGAMVPQGADAIVMQEACEFSKD 122
           VRAA+CASG+ RLRVSQRIPAGHVG  LEPGTAARIFTGAM+P GADA+VMQEACE    
Sbjct: 77  VRAADCASGQARLRVSQRIPAGHVGQPLEPGTAARIFTGAMMPAGADAVVMQEACE---- 132

Query: 123 ADGDHVIVRHVPQAGEWIRETGEDIKAADTILPAGVRLRPQELGLAASVGLASLPVLRKL 182
           ADG+HV++RHVP AGEW+R  GEDI+   TIL AG RLRPQELGLAAS+G A L VLR++
Sbjct: 133 ADGEHVVIRHVPAAGEWVRTIGEDIRQGSTILAAGTRLRPQELGLAASIGQAQLQVLRRV 192

Query: 183 RVAVFFTGDELTMPGEALKPGAIYNSNRFLLRGLLENLGCEVKDFGIVPDRLQATRDTLR 242
           RVAVFFTGDELTMPG+ LKPG IYNSNRFLLRGLL+ LGC+V DFGIVPD LQATR+TLR
Sbjct: 193 RVAVFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQKLGCQVSDFGIVPDSLQATRETLR 252

Query: 243 AAAASHDLIITSGGVSVGEEDHVKPAVEAEGRLNMWQIAMKPGKPLAFGEINR--GSGKA 300
            AA  HDLIITSGGVSVGEEDHVKPAVEAEGR+NMWQIAMKPGKPLAFG++ R  G+G+A
Sbjct: 253 EAAREHDLIITSGGVSVGEEDHVKPAVEAEGRINMWQIAMKPGKPLAFGQVRRGEGTGEA 312

Query: 301 FFLGLPGNPVSTFVTFLVFVRPFLLRLQGI--DNVAPRTLTLRADFNWHKADRRQEFLRA 358
           FF+GLPGNPVS+FVTFL+FVRPFLLRLQG+  + V P+ + LRADF+W +ADRRQEFLR 
Sbjct: 313 FFMGLPGNPVSSFVTFLLFVRPFLLRLQGLPREAVLPQAVALRADFDWPRADRRQEFLRV 372

Query: 359 RFNDAGGLDLFPKQGSGVLTSTVWGDGLIDNPAGKTIAEGDLVRFIPFDHLLH 411
           R N  GGLDLFP QGS VLTST W DGLIDNP G+TIA GD+V+F+ FDHLL+
Sbjct: 373 RRNAQGGLDLFPSQGSAVLTSTAWADGLIDNPPGQTIAAGDMVQFLAFDHLLN 425


>gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA
           protein [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  261 bits (667), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 172/421 (40%), Positives = 230/421 (54%), Gaps = 25/421 (5%)

Query: 5   PPLLSVAEALKFLLKSAVPLNQAETIPTLEANGRVLAAPQVSQINVPGMDNSQMDGYAVR 64
           P  ++V  A   + +   P+   E +P   A  RVLA   VS+I+VP  DNS MDGYA+R
Sbjct: 18  PHAMTVERAQAVIREFIHPIEAVEKLPIRSALSRVLAQDIVSRIDVPAHDNSAMDGYALR 77

Query: 65  AAECASG-ETRLRVSQRIPAG-----HVGVALEPGTAARIFTGAMVPQGADAIVMQEACE 118
             + A G E RL++   + AG      VG    PG   RI TGA +P G D ++ QE   
Sbjct: 78  GEDLAEGRELRLQIIGEVHAGDRFTGQVG----PGQCVRIMTGAPMPAGCDTVIPQE--- 130

Query: 119 FSKDADGDHVIVRHVP----QAGEWIRETGEDIKAADTILPAGVRLRPQELGLAASVGLA 174
            + DAD   V V   P    +AG+  R  GED+      LP G  LRP ++GL AS+GLA
Sbjct: 131 LTVDADQSAVTV---PPGRVRAGDNRRLRGEDLALGSVALPRGRILRPSDIGLLASLGLA 187

Query: 175 SLPVLRKLRVAVFFTGDELTMPGEALKPGAIYNSNRFLLRGLLENLGCEVKDFGIVPDRL 234
             PV R+LRVA F TGDEL   GE L  G +Y+SNR+ L G+L  LGCEV D G+VPD  
Sbjct: 188 EAPVQRRLRVAFFSTGDELRSVGEPLDEGCVYDSNRYTLHGMLTRLGCEVLDMGVVPDDP 247

Query: 235 QATRDTLRAAAASHDLIITSGGVSVGEEDHVKPAVEAEGRLNMWQIAMKPGKPLAFGEIN 294
            A     R+A    D +ITSGGVSVG  D+ K  + + G +  W+IAM+PG+PLAFG I 
Sbjct: 248 AALEAAFRSACEEADAVITSGGVSVGAADYTKQIMASLGEMAFWKIAMRPGRPLAFGRIR 307

Query: 295 RGSGKAFFLGLPGNPVSTFVTFLVFVRPFLLRLQGIDNVAPRTLTLRADFNWHKADRRQE 354
               +A+  GLPGNPV+  V+F  FVR  LLRL G +      L ++      K   R E
Sbjct: 308 SRGREAYLFGLPGNPVAVTVSFSFFVRDALLRLAGAEAKPLPRLRVKTATAIRKKAGRTE 367

Query: 355 FLRARF--NDAG--GLDLFPKQGSGVLTSTVWGDGLIDNPAGK-TIAEGDLVRFIPFDHL 409
           + R     +D+G   + L   QGSG+L S    + +I+    +  +A G+ V  + FD L
Sbjct: 368 YQRGILAPDDSGNWSVRLTGMQGSGILRSMSDANCIIELEHDRGDVAAGEEVAVVLFDGL 427

Query: 410 L 410
           +
Sbjct: 428 V 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,308,017
Number of extensions: 54586
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 2
Length of query: 411
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 323
Effective length of database: 1,203,190
Effective search space: 388630370
Effective search space used: 388630370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)