BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0187.p
         (390 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312338|ref|YP_003776430.1| 3-hydroxy-3-methylglutaryl-coen...   600   e-173

>gi|300312338|ref|YP_003776430.1|
           3-hydroxy-3-methylglutaryl-coenzyme A reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 436

 Score =  600 bits (1548), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 304/425 (71%), Positives = 337/425 (79%), Gaps = 38/425 (8%)

Query: 2   TVDSRLPQFRSLNPQQRLEQIAQRANLTADEVALLANPAALPLEVANGMIENVIGTFQIP 61
           T DSRLP FR+  P QRL ++ + A L   E ALL  P ALPL  A+GMIENV+G+FQ+P
Sbjct: 10  TPDSRLPGFRTYTPAQRLAEVGRLAQLDQAEQALLGQPGALPLGTADGMIENVVGSFQLP 69

Query: 62  MGVAGYFQLNGKDVLVPMAVEEPSVVAAASFMAKLIRDCGGFHTSSSAPLMRAQVQVIGV 121
           +GVAGYFQLNG+DVLVPMAVEEPSVVAAASFMAKL+R CGGF TSSS PLMRAQ+Q+ G+
Sbjct: 70  LGVAGYFQLNGRDVLVPMAVEEPSVVAAASFMAKLVRTCGGFQTSSSLPLMRAQIQLTGI 129

Query: 122 SDPYGARVL--------------------------------------AGAMVIVHLIVDV 143
           SDP+GAR+                                        GAMV+ HLIVDV
Sbjct: 130 SDPHGARLAILKERQAIIDIANSRDQLLQQLGGGCRDIEVQVFPDTRRGAMVVTHLIVDV 189

Query: 144 RDAMGANTVNTMAEAVAGHIEQITGGKVRLRILSNLADLRLARAHVRVSPEALTTADYDG 203
           RDAMGANTVNTMAEAVA HIE++TGGKVRLRILSNLADLRLARA V+VS + L+TA Y G
Sbjct: 190 RDAMGANTVNTMAEAVASHIERVTGGKVRLRILSNLADLRLARARVKVSADVLSTAQYRG 249

Query: 204 ADVINRIVDAYTFAAVDPYRAATHNKGIMNGIDPVIVATGNDWRAVEAGAHAYACRNGHY 263
            +VIN IVDAY  AAVDPYRAATHNKGIMNGIDPVIVATGNDWRAVEAGAHAYACR+G Y
Sbjct: 250 EEVINGIVDAYELAAVDPYRAATHNKGIMNGIDPVIVATGNDWRAVEAGAHAYACRHGRY 309

Query: 264 TSLSTWEIGNDGHLVGTLEIPMPVGLVGGATKTHPLARLALKMMDVKSAQELAEIAVAVG 323
           TSL+ WEI  DG LVGTLEIPMPVGLVGGATKTHP AR+ALK++ V+SAQ LAE+AVAVG
Sbjct: 310 TSLTHWEIAADGDLVGTLEIPMPVGLVGGATKTHPAARVALKILGVQSAQALAEVAVAVG 369

Query: 324 LAQNMAALRALATEGIQRGHMALHARNIGLAAGASAEEMDWVVQQMVAAKDVRVDFAVKL 383
           LAQNMAALRALATEGIQRGHMALHARNI LAAGA A EMDW+VQQMVA  DVRVD+A  L
Sbjct: 370 LAQNMAALRALATEGIQRGHMALHARNIALAAGAEASEMDWLVQQMVARHDVRVDYAKAL 429

Query: 384 LAQRR 388
           LA+RR
Sbjct: 430 LAERR 434


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,132,806
Number of extensions: 45712
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,207,925
Effective search space: 366001275
Effective search space used: 366001275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)